Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12819 | 5' | -61 | NC_003387.1 | + | 15990 | 0.67 | 0.330175 |
Target: 5'- -uCGGGCcGCacuGGCUGGucCGGuacgGCCGCCGa -3' miRNA: 3'- uuGCCCGaCG---CCGACU--GCU----UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 15806 | 0.69 | 0.272067 |
Target: 5'- cAGCGGGgUGCcGCUGuC--GCCGCCGg -3' miRNA: 3'- -UUGCCCgACGcCGACuGcuUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 13842 | 0.69 | 0.271396 |
Target: 5'- cACGGuucggcgcgucuaGCUaaCGGCcGGCGAGCCGCCGa -3' miRNA: 3'- uUGCC-------------CGAc-GCCGaCUGCUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 12955 | 0.66 | 0.414925 |
Target: 5'- cACGucGGCgucugGCGGCUGuacCGGGCgGCCa -3' miRNA: 3'- uUGC--CCGa----CGCCGACu--GCUUGgCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 10668 | 0.69 | 0.252494 |
Target: 5'- cGACGcGGCUGCGaccacggccGCcucGGCGGugGCCGCCGg -3' miRNA: 3'- -UUGC-CCGACGC---------CGa--CUGCU--UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 7329 | 0.67 | 0.354207 |
Target: 5'- cGAUcGGCUcggGCGGCcgGGCGcagcuAACCGCCGg -3' miRNA: 3'- -UUGcCCGA---CGCCGa-CUGC-----UUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 7272 | 0.67 | 0.357503 |
Target: 5'- uGACGGGUU-CGGCgUGACGuucacgcccggcgguAACuCGCCGg -3' miRNA: 3'- -UUGCCCGAcGCCG-ACUGC---------------UUG-GCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 5840 | 0.7 | 0.234094 |
Target: 5'- -uCGGGCUGCGccGCagGugGGGgCGCCGc -3' miRNA: 3'- uuGCCCGACGC--CGa-CugCUUgGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 4552 | 0.66 | 0.370901 |
Target: 5'- uGCGGGcCUGCGcCUGcGCGA-CCGCgCGg -3' miRNA: 3'- uUGCCC-GACGCcGAC-UGCUuGGCG-GC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 1946 | 0.67 | 0.346061 |
Target: 5'- cGACGcaggcGGUUGgGGCUG--GGACCGCCGc -3' miRNA: 3'- -UUGC-----CCGACgCCGACugCUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 1840 | 0.67 | 0.344448 |
Target: 5'- --aGGGCUGCGGCcuguuugagaacGGCGucaaCGCCGa -3' miRNA: 3'- uugCCCGACGCCGa-----------CUGCuug-GCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 1627 | 0.67 | 0.322435 |
Target: 5'- -uCGGcGCgUGCuGGCUGAUGGacgacgacgGCCGCCa -3' miRNA: 3'- uuGCC-CG-ACG-CCGACUGCU---------UGGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 1116 | 0.67 | 0.322435 |
Target: 5'- cGCGGGUU-CGGCcGugGGuUCGCCGg -3' miRNA: 3'- uUGCCCGAcGCCGaCugCUuGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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