miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12819 5' -61 NC_003387.1 + 38056 0.73 0.1348
Target:  5'- -uCGGGCgGUGGCUGAgCGAG-CGCCGc -3'
miRNA:   3'- uuGCCCGaCGCCGACU-GCUUgGCGGC- -5'
12819 5' -61 NC_003387.1 + 49590 0.68 0.292841
Target:  5'- -cCGGGCgGUGGcCUGGCaguGCUGCCGc -3'
miRNA:   3'- uuGCCCGaCGCC-GACUGcu-UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 45862 0.68 0.314832
Target:  5'- cGCGagcuGCUGCGGCUG-CGcGCCGCgGc -3'
miRNA:   3'- uUGCc---CGACGCCGACuGCuUGGCGgC- -5'
12819 5' -61 NC_003387.1 + 12955 0.66 0.414925
Target:  5'- cACGucGGCgucugGCGGCUGuacCGGGCgGCCa -3'
miRNA:   3'- uUGC--CCGa----CGCCGACu--GCUUGgCGGc -5'
12819 5' -61 NC_003387.1 + 32330 0.72 0.16263
Target:  5'- cAUGGaccGCUGCGGCUGAUc-GCCGCCu -3'
miRNA:   3'- uUGCC---CGACGCCGACUGcuUGGCGGc -5'
12819 5' -61 NC_003387.1 + 40492 0.71 0.171485
Target:  5'- gAGCGccGCUGC-GCUGGCG-ACCGCCGg -3'
miRNA:   3'- -UUGCc-CGACGcCGACUGCuUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 35671 0.71 0.195527
Target:  5'- cGCGGGCgGUGGCUGAgCGGGCaCGUg- -3'
miRNA:   3'- uUGCCCGaCGCCGACU-GCUUG-GCGgc -5'
12819 5' -61 NC_003387.1 + 45515 0.7 0.234094
Target:  5'- --aGGGCcgcaGCGaGCUGACGGugUGCUGg -3'
miRNA:   3'- uugCCCGa---CGC-CGACUGCUugGCGGC- -5'
12819 5' -61 NC_003387.1 + 28376 0.76 0.079943
Target:  5'- gGGCGGGCgcaacucGUGGCUGACGcaggaaacGAUCGCCGa -3'
miRNA:   3'- -UUGCCCGa------CGCCGACUGC--------UUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 23822 0.68 0.285782
Target:  5'- -uCGGGCgGUGGCccGGCGcccgcgccuaAGCCGCCGc -3'
miRNA:   3'- uuGCCCGaCGCCGa-CUGC----------UUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 10668 0.69 0.252494
Target:  5'- cGACGcGGCUGCGaccacggccGCcucGGCGGugGCCGCCGg -3'
miRNA:   3'- -UUGC-CCGACGC---------CGa--CUGCU--UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 39231 0.69 0.246232
Target:  5'- gAGCGGGUacCGGCgccgGGCGAgGCCGUCGa -3'
miRNA:   3'- -UUGCCCGacGCCGa---CUGCU-UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 25384 0.72 0.154189
Target:  5'- cGAgGGGCUGCGGCUgcucGACGAGaaggCGCgCGa -3'
miRNA:   3'- -UUgCCCGACGCCGA----CUGCUUg---GCG-GC- -5'
12819 5' -61 NC_003387.1 + 13842 0.69 0.271396
Target:  5'- cACGGuucggcgcgucuaGCUaaCGGCcGGCGAGCCGCCGa -3'
miRNA:   3'- uUGCC-------------CGAc-GCCGaCUGCUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 48984 0.72 0.157938
Target:  5'- cGCGGGCaUGCGGCcGuCGAucgcguggcugugGCCGCUGg -3'
miRNA:   3'- uUGCCCG-ACGCCGaCuGCU-------------UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 17011 0.7 0.234689
Target:  5'- gAGCGGGCgcuaaucaaaccgcgGCGGCUGcCGcccUCGCCGg -3'
miRNA:   3'- -UUGCCCGa--------------CGCCGACuGCuu-GGCGGC- -5'
12819 5' -61 NC_003387.1 + 38933 0.69 0.272067
Target:  5'- cAACGuGGCcgcugaucUGCGGCgacGCGAAUUGCCGg -3'
miRNA:   3'- -UUGC-CCG--------ACGCCGac-UGCUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 43921 0.68 0.297863
Target:  5'- -uCGGGC-GCGaGCUGAgCGGgaaucaggucgcccGCCGCCGc -3'
miRNA:   3'- uuGCCCGaCGC-CGACU-GCU--------------UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 44927 0.72 0.158359
Target:  5'- -cCGGGCUGgGGC-GACGAGgCGCUc -3'
miRNA:   3'- uuGCCCGACgCCGaCUGCUUgGCGGc -5'
12819 5' -61 NC_003387.1 + 44875 0.71 0.176072
Target:  5'- --aGGuGCUGgcCGaGCUGACGcAGCCGCCGg -3'
miRNA:   3'- uugCC-CGAC--GC-CGACUGC-UUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.