Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12819 | 5' | -61 | NC_003387.1 | + | 44636 | 0.66 | 0.388125 |
Target: 5'- gGGCGGGUUGgcgccgacCGGCaGcggguuagcGCGGGCCGCCa -3' miRNA: 3'- -UUGCCCGAC--------GCCGaC---------UGCUUGGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 29216 | 0.68 | 0.307366 |
Target: 5'- --gGGGUcggcGCGGUUGGCcgggcaccaGAACCGCCGc -3' miRNA: 3'- uugCCCGa---CGCCGACUG---------CUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 39062 | 0.68 | 0.285782 |
Target: 5'- cGACGGcGCccuCGGC-GAcCGAGCCGCCGc -3' miRNA: 3'- -UUGCC-CGac-GCCGaCU-GCUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 15806 | 0.69 | 0.272067 |
Target: 5'- cAGCGGGgUGCcGCUGuC--GCCGCCGg -3' miRNA: 3'- -UUGCCCgACGcCGACuGcuUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 28215 | 1.07 | 0.000362 |
Target: 5'- gAACGGGCUGCGGCUGACGAACCGCCGg -3' miRNA: 3'- -UUGCCCGACGCCGACUGCUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 48937 | 0.77 | 0.067585 |
Target: 5'- cGGCGGGUUGCuGGCgGGCGGGCUGCuCGg -3' miRNA: 3'- -UUGCCCGACG-CCGaCUGCUUGGCG-GC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 33987 | 0.75 | 0.091865 |
Target: 5'- cAGCGGGUcGCGGUcgacGACGAGCUGCCu -3' miRNA: 3'- -UUGCCCGaCGCCGa---CUGCUUGGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 40360 | 0.73 | 0.124268 |
Target: 5'- uGCGGGCcgucgcgGCGGCguuggUGAUGAACuCGCCGu -3' miRNA: 3'- uUGCCCGa------CGCCG-----ACUGCUUG-GCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 5840 | 0.7 | 0.234094 |
Target: 5'- -uCGGGCUGCGccGCagGugGGGgCGCCGc -3' miRNA: 3'- uuGCCCGACGC--CGa-CugCUUgGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 19906 | 0.69 | 0.258241 |
Target: 5'- uGCGGGCUGC-GCUGAgauugcuUGAGCUGCg- -3' miRNA: 3'- uUGCCCGACGcCGACU-------GCUUGGCGgc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 22698 | 0.69 | 0.258886 |
Target: 5'- cGGCGGcGCUGgCGGCcugGGCGAuACCGaCCa -3' miRNA: 3'- -UUGCC-CGAC-GCCGa--CUGCU-UGGC-GGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 20177 | 0.69 | 0.265411 |
Target: 5'- --aGGGC-GCGGUUGAUGcGCUGCUGc -3' miRNA: 3'- uugCCCGaCGCCGACUGCuUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 22357 | 0.66 | 0.405866 |
Target: 5'- cAGCGaGCUGCaGGCgGuCGAcucgugaaugugGCCGCCGg -3' miRNA: 3'- -UUGCcCGACG-CCGaCuGCU------------UGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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