Results 21 - 40 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12819 | 5' | -61 | NC_003387.1 | + | 10668 | 0.69 | 0.252494 |
Target: 5'- cGACGcGGCUGCGaccacggccGCcucGGCGGugGCCGCCGg -3' miRNA: 3'- -UUGC-CCGACGC---------CGa--CUGCU--UGGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 13842 | 0.69 | 0.271396 |
Target: 5'- cACGGuucggcgcgucuaGCUaaCGGCcGGCGAGCCGCCGa -3' miRNA: 3'- uUGCC-------------CGAc-GCCGaCUGCUUGGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 38933 | 0.69 | 0.272067 |
Target: 5'- cAACGuGGCcgcugaucUGCGGCgacGCGAAUUGCCGg -3' miRNA: 3'- -UUGC-CCG--------ACGCCGac-UGCUUGGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 23822 | 0.68 | 0.285782 |
Target: 5'- -uCGGGCgGUGGCccGGCGcccgcgccuaAGCCGCCGc -3' miRNA: 3'- uuGCCCGaCGCCGa-CUGC----------UUGGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 49590 | 0.68 | 0.292841 |
Target: 5'- -cCGGGCgGUGGcCUGGCaguGCUGCCGc -3' miRNA: 3'- uuGCCCGaCGCC-GACUGcu-UGGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 43921 | 0.68 | 0.297863 |
Target: 5'- -uCGGGC-GCGaGCUGAgCGGgaaucaggucgcccGCCGCCGc -3' miRNA: 3'- uuGCCCGaCGC-CGACU-GCU--------------UGGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 45862 | 0.68 | 0.314832 |
Target: 5'- cGCGagcuGCUGCGGCUG-CGcGCCGCgGc -3' miRNA: 3'- uUGCc---CGACGCCGACuGCuUGGCGgC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 1627 | 0.67 | 0.322435 |
Target: 5'- -uCGGcGCgUGCuGGCUGAUGGacgacgacgGCCGCCa -3' miRNA: 3'- uuGCC-CG-ACG-CCGACUGCU---------UGGCGGc -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 1116 | 0.67 | 0.322435 |
Target: 5'- cGCGGGUU-CGGCcGugGGuUCGCCGg -3' miRNA: 3'- uUGCCCGAcGCCGaCugCUuGGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 17011 | 0.7 | 0.234689 |
Target: 5'- gAGCGGGCgcuaaucaaaccgcgGCGGCUGcCGcccUCGCCGg -3' miRNA: 3'- -UUGCCCGa--------------CGCCGACuGCuu-GGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 45515 | 0.7 | 0.234094 |
Target: 5'- --aGGGCcgcaGCGaGCUGACGGugUGCUGg -3' miRNA: 3'- uugCCCGa---CGC-CGACUGCUugGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 45247 | 0.76 | 0.084523 |
Target: 5'- cGAUGGGCUggacGCGGCUGGaaUGGAUCGCCa -3' miRNA: 3'- -UUGCCCGA----CGCCGACU--GCUUGGCGGc -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 38056 | 0.73 | 0.1348 |
Target: 5'- -uCGGGCgGUGGCUGAgCGAG-CGCCGc -3' miRNA: 3'- uuGCCCGaCGCCGACU-GCUUgGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 25384 | 0.72 | 0.154189 |
Target: 5'- cGAgGGGCUGCGGCUgcucGACGAGaaggCGCgCGa -3' miRNA: 3'- -UUgCCCGACGCCGA----CUGCUUg---GCG-GC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 48984 | 0.72 | 0.157938 |
Target: 5'- cGCGGGCaUGCGGCcGuCGAucgcguggcugugGCCGCUGg -3' miRNA: 3'- uUGCCCG-ACGCCGaCuGCU-------------UGGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 44927 | 0.72 | 0.158359 |
Target: 5'- -cCGGGCUGgGGC-GACGAGgCGCUc -3' miRNA: 3'- uuGCCCGACgCCGaCUGCUUgGCGGc -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 32330 | 0.72 | 0.16263 |
Target: 5'- cAUGGaccGCUGCGGCUGAUc-GCCGCCu -3' miRNA: 3'- uUGCC---CGACGCCGACUGcuUGGCGGc -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 40492 | 0.71 | 0.171485 |
Target: 5'- gAGCGccGCUGC-GCUGGCG-ACCGCCGg -3' miRNA: 3'- -UUGCc-CGACGcCGACUGCuUGGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 44875 | 0.71 | 0.176072 |
Target: 5'- --aGGuGCUGgcCGaGCUGACGcAGCCGCCGg -3' miRNA: 3'- uugCC-CGAC--GC-CGACUGC-UUGGCGGC- -5' |
|||||||
12819 | 5' | -61 | NC_003387.1 | + | 35671 | 0.71 | 0.195527 |
Target: 5'- cGCGGGCgGUGGCUGAgCGGGCaCGUg- -3' miRNA: 3'- uUGCCCGaCGCCGACU-GCUUG-GCGgc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home