Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12819 | 5' | -61 | NC_003387.1 | + | 48984 | 0.72 | 0.157938 |
Target: 5'- cGCGGGCaUGCGGCcGuCGAucgcguggcugugGCCGCUGg -3' miRNA: 3'- uUGCCCG-ACGCCGaCuGCU-------------UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 44927 | 0.72 | 0.158359 |
Target: 5'- -cCGGGCUGgGGC-GACGAGgCGCUc -3' miRNA: 3'- uuGCCCGACgCCGaCUGCUUgGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 32330 | 0.72 | 0.16263 |
Target: 5'- cAUGGaccGCUGCGGCUGAUc-GCCGCCu -3' miRNA: 3'- uUGCC---CGACGCCGACUGcuUGGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 40492 | 0.71 | 0.171485 |
Target: 5'- gAGCGccGCUGC-GCUGGCG-ACCGCCGg -3' miRNA: 3'- -UUGCc-CGACGcCGACUGCuUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 44875 | 0.71 | 0.176072 |
Target: 5'- --aGGuGCUGgcCGaGCUGACGcAGCCGCCGg -3' miRNA: 3'- uugCC-CGAC--GC-CGACUGC-UUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 35671 | 0.71 | 0.195527 |
Target: 5'- cGCGGGCgGUGGCUGAgCGGGCaCGUg- -3' miRNA: 3'- uUGCCCGaCGCCGACU-GCUUG-GCGgc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 45515 | 0.7 | 0.234094 |
Target: 5'- --aGGGCcgcaGCGaGCUGACGGugUGCUGg -3' miRNA: 3'- uugCCCGa---CGC-CGACUGCUugGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 17011 | 0.7 | 0.234689 |
Target: 5'- gAGCGGGCgcuaaucaaaccgcgGCGGCUGcCGcccUCGCCGg -3' miRNA: 3'- -UUGCCCGa--------------CGCCGACuGCuu-GGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 39231 | 0.69 | 0.246232 |
Target: 5'- gAGCGGGUacCGGCgccgGGCGAgGCCGUCGa -3' miRNA: 3'- -UUGCCCGacGCCGa---CUGCU-UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 10668 | 0.69 | 0.252494 |
Target: 5'- cGACGcGGCUGCGaccacggccGCcucGGCGGugGCCGCCGg -3' miRNA: 3'- -UUGC-CCGACGC---------CGa--CUGCU--UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 13842 | 0.69 | 0.271396 |
Target: 5'- cACGGuucggcgcgucuaGCUaaCGGCcGGCGAGCCGCCGa -3' miRNA: 3'- uUGCC-------------CGAc-GCCGaCUGCUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 38933 | 0.69 | 0.272067 |
Target: 5'- cAACGuGGCcgcugaucUGCGGCgacGCGAAUUGCCGg -3' miRNA: 3'- -UUGC-CCG--------ACGCCGac-UGCUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 28376 | 0.76 | 0.079943 |
Target: 5'- gGGCGGGCgcaacucGUGGCUGACGcaggaaacGAUCGCCGa -3' miRNA: 3'- -UUGCCCGa------CGCCGACUGC--------UUGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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