miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12820 3' -62.4 NC_003387.1 + 23656 0.66 0.351819
Target:  5'- cAGCGC-CGCgacgcaguuuaugacGCGGCucaaggCGGCCGGAUa -3'
miRNA:   3'- cUCGCGuGCG---------------CGCUGca----GCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 52387 0.66 0.35669
Target:  5'- -cGCGCACGCGgaucuUGGCGUgCGugucGCCGGGc -3'
miRNA:   3'- cuCGCGUGCGC-----GCUGCA-GC----CGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 48195 0.66 0.35669
Target:  5'- aGGUGCcCGCaccgGCGGCGgCGGCCGaGGUg -3'
miRNA:   3'- cUCGCGuGCG----CGCUGCaGCCGGC-CUA- -5'
12820 3' -62.4 NC_003387.1 + 50438 0.66 0.35669
Target:  5'- cGGCGUACGCcagcgaggaCGACGUCGaGCCGa-- -3'
miRNA:   3'- cUCGCGUGCGc--------GCUGCAGC-CGGCcua -5'
12820 3' -62.4 NC_003387.1 + 1941 0.66 0.364086
Target:  5'- cAGCGCAUGauccggcCGCGG-GUCuGGCCGGGc -3'
miRNA:   3'- cUCGCGUGC-------GCGCUgCAG-CCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 25202 0.66 0.364914
Target:  5'- cAG-GCAaccuCGCGGCGgCGGCCGGAUc -3'
miRNA:   3'- cUCgCGUgc--GCGCUGCaGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 9729 0.66 0.364914
Target:  5'- -cGCGUACGgGuCGGCGUCaaGGUCGGc- -3'
miRNA:   3'- cuCGCGUGCgC-GCUGCAG--CCGGCCua -5'
12820 3' -62.4 NC_003387.1 + 21471 0.66 0.364914
Target:  5'- uGGCGCAgccCGCGCcg-GUCGGgCCGGGc -3'
miRNA:   3'- cUCGCGU---GCGCGcugCAGCC-GGCCUa -5'
12820 3' -62.4 NC_003387.1 + 34077 0.66 0.364914
Target:  5'- gGAGCGCAgGCggauucgcaaaGgGGCGUCGGCauGAc -3'
miRNA:   3'- -CUCGCGUgCG-----------CgCUGCAGCCGgcCUa -5'
12820 3' -62.4 NC_003387.1 + 19331 0.66 0.364914
Target:  5'- cAGCGaCGaGCGCGGCGagaaccUGGCCGGGc -3'
miRNA:   3'- cUCGC-GUgCGCGCUGCa-----GCCGGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.