miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12820 3' -62.4 NC_003387.1 + 20809 0.7 0.198498
Target:  5'- uGAGCcaccgcucggaGCAggggauacguCGCGCGACGUCGGCgaCGGGa -3'
miRNA:   3'- -CUCG-----------CGU----------GCGCGCUGCAGCCG--GCCUa -5'
12820 3' -62.4 NC_003387.1 + 21471 0.66 0.364914
Target:  5'- uGGCGCAgccCGCGCcg-GUCGGgCCGGGc -3'
miRNA:   3'- cUCGCGU---GCGCGcugCAGCC-GGCCUa -5'
12820 3' -62.4 NC_003387.1 + 22443 0.71 0.15294
Target:  5'- aGGCGCGgGcCGCGGCGUUGGCCu--- -3'
miRNA:   3'- cUCGCGUgC-GCGCUGCAGCCGGccua -5'
12820 3' -62.4 NC_003387.1 + 22509 0.68 0.24307
Target:  5'- cGGCgGCGCGCuCGACGUCGGCguacCGGc- -3'
miRNA:   3'- cUCG-CGUGCGcGCUGCAGCCG----GCCua -5'
12820 3' -62.4 NC_003387.1 + 23656 0.66 0.351819
Target:  5'- cAGCGC-CGCgacgcaguuuaugacGCGGCucaaggCGGCCGGAUa -3'
miRNA:   3'- cUCGCGuGCG---------------CGCUGca----GCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 25202 0.66 0.364914
Target:  5'- cAG-GCAaccuCGCGGCGgCGGCCGGAUc -3'
miRNA:   3'- cUCgCGUgc--GCGCUGCaGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 27457 1.06 0.000343
Target:  5'- cGAGCGCACGCGCGACGUCGGCCGGAUa -3'
miRNA:   3'- -CUCGCGUGCGCGCUGCAGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 30036 0.68 0.26182
Target:  5'- aGGCGCACGUGCuACGaaacccgcUCGGCCGu-- -3'
miRNA:   3'- cUCGCGUGCGCGcUGC--------AGCCGGCcua -5'
12820 3' -62.4 NC_003387.1 + 31021 0.67 0.28863
Target:  5'- cGAGCGUGCGcCGgGGCGgCGGCCa--- -3'
miRNA:   3'- -CUCGCGUGC-GCgCUGCaGCCGGccua -5'
12820 3' -62.4 NC_003387.1 + 31259 0.66 0.340637
Target:  5'- cGGCGCGgGCuGCGccaGCGg-GGCCGGGUu -3'
miRNA:   3'- cUCGCGUgCG-CGC---UGCagCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 32230 0.66 0.340637
Target:  5'- -uGCGCGaGCGCGACGagcUGGCCGa-- -3'
miRNA:   3'- cuCGCGUgCGCGCUGCa--GCCGGCcua -5'
12820 3' -62.4 NC_003387.1 + 32526 0.66 0.332808
Target:  5'- cGAGCGCAUGCguaguucacgGCGGCGcCGuCCGGu- -3'
miRNA:   3'- -CUCGCGUGCG----------CGCUGCaGCcGGCCua -5'
12820 3' -62.4 NC_003387.1 + 33584 0.67 0.281732
Target:  5'- uGAGCGCGUGCGCGACGaagaUCccGCCGaGGUg -3'
miRNA:   3'- -CUCGCGUGCGCGCUGC----AGc-CGGC-CUA- -5'
12820 3' -62.4 NC_003387.1 + 34077 0.66 0.364914
Target:  5'- gGAGCGCAgGCggauucgcaaaGgGGCGUCGGCauGAc -3'
miRNA:   3'- -CUCGCGUgCG-----------CgCUGCAGCCGgcCUa -5'
12820 3' -62.4 NC_003387.1 + 36779 0.73 0.107942
Target:  5'- --aUGCAgGCGCGA-GUCGGCCGGGc -3'
miRNA:   3'- cucGCGUgCGCGCUgCAGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 37106 0.76 0.065814
Target:  5'- -cGCGCccucgACGUGCucGACGUCGGCCGGGc -3'
miRNA:   3'- cuCGCG-----UGCGCG--CUGCAGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 37284 0.7 0.174398
Target:  5'- aGGCGcCugGCGCGcuCGUCGGCgCGGu- -3'
miRNA:   3'- cUCGC-GugCGCGCu-GCAGCCG-GCCua -5'
12820 3' -62.4 NC_003387.1 + 38091 0.66 0.348597
Target:  5'- cGGCcuuGCccuuCGCGUacACGUCGGCCGGGUu -3'
miRNA:   3'- cUCG---CGu---GCGCGc-UGCAGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 39081 0.69 0.214314
Target:  5'- cGAGcCGC-CGC-CGACGgUGGCCGGGUu -3'
miRNA:   3'- -CUC-GCGuGCGcGCUGCaGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 41700 0.7 0.169902
Target:  5'- cGGCGuCGCgGCGcCGACGaaggCGGCCGGGg -3'
miRNA:   3'- cUCGC-GUG-CGC-GCUGCa---GCCGGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.