miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12820 3' -62.4 NC_003387.1 + 31259 0.66 0.340637
Target:  5'- cGGCGCGgGCuGCGccaGCGg-GGCCGGGUu -3'
miRNA:   3'- cUCGCGUgCG-CGC---UGCagCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 31021 0.67 0.28863
Target:  5'- cGAGCGUGCGcCGgGGCGgCGGCCa--- -3'
miRNA:   3'- -CUCGCGUGC-GCgCUGCaGCCGGccua -5'
12820 3' -62.4 NC_003387.1 + 30036 0.68 0.26182
Target:  5'- aGGCGCACGUGCuACGaaacccgcUCGGCCGu-- -3'
miRNA:   3'- cUCGCGUGCGCGcUGC--------AGCCGGCcua -5'
12820 3' -62.4 NC_003387.1 + 27457 1.06 0.000343
Target:  5'- cGAGCGCACGCGCGACGUCGGCCGGAUa -3'
miRNA:   3'- -CUCGCGUGCGCGCUGCAGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 25202 0.66 0.364914
Target:  5'- cAG-GCAaccuCGCGGCGgCGGCCGGAUc -3'
miRNA:   3'- cUCgCGUgc--GCGCUGCaGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 23656 0.66 0.351819
Target:  5'- cAGCGC-CGCgacgcaguuuaugacGCGGCucaaggCGGCCGGAUa -3'
miRNA:   3'- cUCGCGuGCG---------------CGCUGca----GCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 22509 0.68 0.24307
Target:  5'- cGGCgGCGCGCuCGACGUCGGCguacCGGc- -3'
miRNA:   3'- cUCG-CGUGCGcGCUGCAGCCG----GCCua -5'
12820 3' -62.4 NC_003387.1 + 22443 0.71 0.15294
Target:  5'- aGGCGCGgGcCGCGGCGUUGGCCu--- -3'
miRNA:   3'- cUCGCGUgC-GCGCUGCAGCCGGccua -5'
12820 3' -62.4 NC_003387.1 + 21471 0.66 0.364914
Target:  5'- uGGCGCAgccCGCGCcg-GUCGGgCCGGGc -3'
miRNA:   3'- cUCGCGU---GCGCGcugCAGCC-GGCCUa -5'
12820 3' -62.4 NC_003387.1 + 20809 0.7 0.198498
Target:  5'- uGAGCcaccgcucggaGCAggggauacguCGCGCGACGUCGGCgaCGGGa -3'
miRNA:   3'- -CUCG-----------CGU----------GCGCGCUGCAGCCG--GCCUa -5'
12820 3' -62.4 NC_003387.1 + 20511 0.68 0.268327
Target:  5'- -cGCGCA-GCGCGGCGUCGcgcucGUCGGu- -3'
miRNA:   3'- cuCGCGUgCGCGCUGCAGC-----CGGCCua -5'
12820 3' -62.4 NC_003387.1 + 20217 0.68 0.249193
Target:  5'- -cGUGCACGCaGCGGCaGUCGucgcaccacggcGCCGGGg -3'
miRNA:   3'- cuCGCGUGCG-CGCUG-CAGC------------CGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 19331 0.66 0.364914
Target:  5'- cAGCGaCGaGCGCGGCGagaaccUGGCCGGGc -3'
miRNA:   3'- cUCGC-GUgCGCGCUGCa-----GCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 18602 0.7 0.193456
Target:  5'- -cGCGCAC-CGCGACGUCGacGCCGccGAUc -3'
miRNA:   3'- cuCGCGUGcGCGCUGCAGC--CGGC--CUA- -5'
12820 3' -62.4 NC_003387.1 + 17779 0.69 0.208925
Target:  5'- cGAGCuuGCGCaGCGGCa-CGGCCGGGa -3'
miRNA:   3'- -CUCGcgUGCG-CGCUGcaGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 17518 0.68 0.249193
Target:  5'- cGGCcaGCAUGCGCaGCGgcUCGGCCGGu- -3'
miRNA:   3'- cUCG--CGUGCGCGcUGC--AGCCGGCCua -5'
12820 3' -62.4 NC_003387.1 + 15988 0.7 0.188527
Target:  5'- aGGCGCuCGCaGaCGGCGUCgaGGCCGGGc -3'
miRNA:   3'- cUCGCGuGCG-C-GCUGCAG--CCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 14519 0.68 0.268327
Target:  5'- -uGCGCcuGCGUGCGGuacuCGgCGGCCGGGc -3'
miRNA:   3'- cuCGCG--UGCGCGCU----GCaGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 12273 0.66 0.332808
Target:  5'- -cGCGCcUG-GCGACcggCGGCCGGAUc -3'
miRNA:   3'- cuCGCGuGCgCGCUGca-GCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 11347 0.67 0.310121
Target:  5'- cGGCGCucggccucACGCuCGGCGUCGGCCu--- -3'
miRNA:   3'- cUCGCG--------UGCGcGCUGCAGCCGGccua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.