miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12820 3' -62.4 NC_003387.1 + 4978 0.66 0.31755
Target:  5'- -cGUGCuCGCGCaGAgGUCGGUCGcGAUu -3'
miRNA:   3'- cuCGCGuGCGCG-CUgCAGCCGGC-CUA- -5'
12820 3' -62.4 NC_003387.1 + 11347 0.67 0.310121
Target:  5'- cGGCGCucggccucACGCuCGGCGUCGGCCu--- -3'
miRNA:   3'- cUCGCG--------UGCGcGCUGCAGCCGGccua -5'
12820 3' -62.4 NC_003387.1 + 31021 0.67 0.28863
Target:  5'- cGAGCGUGCGcCGgGGCGgCGGCCa--- -3'
miRNA:   3'- -CUCGCGUGC-GCgCUGCaGCCGGccua -5'
12820 3' -62.4 NC_003387.1 + 33584 0.67 0.281732
Target:  5'- uGAGCGCGUGCGCGACGaagaUCccGCCGaGGUg -3'
miRNA:   3'- -CUCGCGUGCGCGCUGC----AGc-CGGC-CUA- -5'
12820 3' -62.4 NC_003387.1 + 47794 0.67 0.281732
Target:  5'- --uCGacaACGCGCGACGcCGcGCCGGGc -3'
miRNA:   3'- cucGCg--UGCGCGCUGCaGC-CGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 44020 0.67 0.281731
Target:  5'- cGAGCG-GCuCGuCGACGUCGGUCGGc- -3'
miRNA:   3'- -CUCGCgUGcGC-GCUGCAGCCGGCCua -5'
12820 3' -62.4 NC_003387.1 + 20511 0.68 0.268327
Target:  5'- -cGCGCA-GCGCGGCGUCGcgcucGUCGGu- -3'
miRNA:   3'- cuCGCGUgCGCGCUGCAGC-----CGGCCua -5'
12820 3' -62.4 NC_003387.1 + 14519 0.68 0.268327
Target:  5'- -uGCGCcuGCGUGCGGuacuCGgCGGCCGGGc -3'
miRNA:   3'- cuCGCG--UGCGCGCU----GCaGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 30036 0.68 0.26182
Target:  5'- aGGCGCACGUGCuACGaaacccgcUCGGCCGu-- -3'
miRNA:   3'- cUCGCGUGCGCGcUGC--------AGCCGGCcua -5'
12820 3' -62.4 NC_003387.1 + 49175 0.68 0.26182
Target:  5'- aGGCGguCGCGCaGGCGgCGGCCGu-- -3'
miRNA:   3'- cUCGCguGCGCG-CUGCaGCCGGCcua -5'
12820 3' -62.4 NC_003387.1 + 52235 0.68 0.255443
Target:  5'- cGGGCGCGCauCGCGACGagcagcUCGcGCCGGu- -3'
miRNA:   3'- -CUCGCGUGc-GCGCUGC------AGC-CGGCCua -5'
12820 3' -62.4 NC_003387.1 + 43113 0.68 0.255443
Target:  5'- cGAGCGCGacgGCGCGGCGccgCGGUggUGGGc -3'
miRNA:   3'- -CUCGCGUg--CGCGCUGCa--GCCG--GCCUa -5'
12820 3' -62.4 NC_003387.1 + 17518 0.68 0.249193
Target:  5'- cGGCcaGCAUGCGCaGCGgcUCGGCCGGu- -3'
miRNA:   3'- cUCG--CGUGCGCGcUGC--AGCCGGCCua -5'
12820 3' -62.4 NC_003387.1 + 20217 0.68 0.249193
Target:  5'- -cGUGCACGCaGCGGCaGUCGucgcaccacggcGCCGGGg -3'
miRNA:   3'- cuCGCGUGCG-CGCUG-CAGC------------CGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 22509 0.68 0.24307
Target:  5'- cGGCgGCGCGCuCGACGUCGGCguacCGGc- -3'
miRNA:   3'- cUCG-CGUGCGcGCUGCAGCCG----GCCua -5'
12820 3' -62.4 NC_003387.1 + 44381 0.68 0.242464
Target:  5'- cAGCgGCACGUcggggucGuCGAgGUCGGCCGGGc -3'
miRNA:   3'- cUCG-CGUGCG-------C-GCUgCAGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 8284 0.69 0.219822
Target:  5'- cAGCGCcuCGUGCG-CGUCGGCgGGc- -3'
miRNA:   3'- cUCGCGu-GCGCGCuGCAGCCGgCCua -5'
12820 3' -62.4 NC_003387.1 + 39081 0.69 0.214314
Target:  5'- cGAGcCGC-CGC-CGACGgUGGCCGGGUu -3'
miRNA:   3'- -CUC-GCGuGCGcGCUGCaGCCGGCCUA- -5'
12820 3' -62.4 NC_003387.1 + 17779 0.69 0.208925
Target:  5'- cGAGCuuGCGCaGCGGCa-CGGCCGGGa -3'
miRNA:   3'- -CUCGcgUGCG-CGCUGcaGCCGGCCUa -5'
12820 3' -62.4 NC_003387.1 + 6497 0.69 0.203654
Target:  5'- cGGGC-CGCGaaggcaGUuGCGUCGGCCGGGUg -3'
miRNA:   3'- -CUCGcGUGCg-----CGcUGCAGCCGGCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.