miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12821 3' -57.8 NC_003387.1 + 26802 0.66 0.604767
Target:  5'- gUGGguGuGggGCGCCGUAUucGCCGUg -3'
miRNA:   3'- gGCUguC-CuaCGCGGCGUAcuCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 39766 0.66 0.604767
Target:  5'- gCCGACGcGGUGCGCaagCGCAacgaGGCCaGCg -3'
miRNA:   3'- -GGCUGUcCUACGCG---GCGUac--UCGG-CG- -5'
12821 3' -57.8 NC_003387.1 + 49180 0.66 0.603691
Target:  5'- gUCGcGCAGGcgGCgGCCGuCGacguugcUGAGcCCGCa -3'
miRNA:   3'- -GGC-UGUCCuaCG-CGGC-GU-------ACUC-GGCG- -5'
12821 3' -57.8 NC_003387.1 + 40137 0.66 0.598315
Target:  5'- cCCGACGGGugAucgggguaagcguccUGCGaCCGCc--AGCCGCc -3'
miRNA:   3'- -GGCUGUCC--U---------------ACGC-GGCGuacUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 1763 0.66 0.594019
Target:  5'- cCCGGC-GGcgGCGCuggCGCccGAGCUGa -3'
miRNA:   3'- -GGCUGuCCuaCGCG---GCGuaCUCGGCg -5'
12821 3' -57.8 NC_003387.1 + 30216 0.66 0.594019
Target:  5'- gCCGACGucGAgcGCGCCGCcgaGGCCGUc -3'
miRNA:   3'- -GGCUGUc-CUa-CGCGGCGuacUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 25175 0.66 0.594019
Target:  5'- cUCGGCGcGGuggccccgGCGCCGCc---GCCGCg -3'
miRNA:   3'- -GGCUGU-CCua------CGCGGCGuacuCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 13904 0.66 0.594019
Target:  5'- uUCGACGucGGGUgGCGCCcgaucggcacCAUGAcGCCGCc -3'
miRNA:   3'- -GGCUGU--CCUA-CGCGGc---------GUACU-CGGCG- -5'
12821 3' -57.8 NC_003387.1 + 3178 0.66 0.594019
Target:  5'- gCCGuaauCGGGGUGaGCCuGCucGGGCUGCg -3'
miRNA:   3'- -GGCu---GUCCUACgCGG-CGuaCUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 3846 0.66 0.583303
Target:  5'- gCGGUAGGcgGCGCCGaCGauccGGCUGCg -3'
miRNA:   3'- gGCUGUCCuaCGCGGC-GUac--UCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 27584 0.66 0.583303
Target:  5'- cCCGAUcGGcUGCGCgGUGU--GCCGCu -3'
miRNA:   3'- -GGCUGuCCuACGCGgCGUAcuCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 21975 0.66 0.583303
Target:  5'- cCCGACAcGGUGCuGCC-CGacGAGCCGg -3'
miRNA:   3'- -GGCUGUcCUACG-CGGcGUa-CUCGGCg -5'
12821 3' -57.8 NC_003387.1 + 18402 0.66 0.583303
Target:  5'- gCGACGGGucg-GCCGCGggcagcgcGGGCUGCu -3'
miRNA:   3'- gGCUGUCCuacgCGGCGUa-------CUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 478 0.66 0.582233
Target:  5'- aCCGGCGcgagcugcucgucGcGAUGCGCgccCGCGUGGcGaCCGCg -3'
miRNA:   3'- -GGCUGU-------------C-CUACGCG---GCGUACU-C-GGCG- -5'
12821 3' -57.8 NC_003387.1 + 30621 0.66 0.572625
Target:  5'- gCCGcCGGGGaugGCGCCGUAcGuGCCccacGCg -3'
miRNA:   3'- -GGCuGUCCUa--CGCGGCGUaCuCGG----CG- -5'
12821 3' -57.8 NC_003387.1 + 41081 0.66 0.572625
Target:  5'- gCGAUcgAGGG-GCGau-CGUGAGCCGCg -3'
miRNA:   3'- gGCUG--UCCUaCGCggcGUACUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 45380 0.66 0.572625
Target:  5'- gCCGGCGGuuagcUGCgcccgGCCGCccGAGCCGa -3'
miRNA:   3'- -GGCUGUCcu---ACG-----CGGCGuaCUCGGCg -5'
12821 3' -57.8 NC_003387.1 + 45447 0.66 0.572625
Target:  5'- cUCGcCGGGccUGCGCCGUG-GAGCCa- -3'
miRNA:   3'- -GGCuGUCCu-ACGCGGCGUaCUCGGcg -5'
12821 3' -57.8 NC_003387.1 + 33963 0.66 0.572625
Target:  5'- gCCGGgguCGGGuAUGagcuGCCGCAgcGGGUCGCg -3'
miRNA:   3'- -GGCU---GUCC-UACg---CGGCGUa-CUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 10981 0.66 0.57156
Target:  5'- -aGAauaucGGcgGCGCCGCAaaggguaUGGGCgGCa -3'
miRNA:   3'- ggCUgu---CCuaCGCGGCGU-------ACUCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.