miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12821 3' -57.8 NC_003387.1 + 29638 0.66 0.565179
Target:  5'- gCCGuACAGGAaugugcugucggccuUGCGCacggcguagUGCGUGAucggcacGCCGCc -3'
miRNA:   3'- -GGC-UGUCCU---------------ACGCG---------GCGUACU-------CGGCG- -5'
12821 3' -57.8 NC_003387.1 + 41123 0.66 0.561995
Target:  5'- aCGACcGGAUcaaguggcagcGCGCCGac--GGCCGCu -3'
miRNA:   3'- gGCUGuCCUA-----------CGCGGCguacUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 36007 0.66 0.561995
Target:  5'- aUCGACGGcgaggucguGGUGCGCCGCA--AGCgGa -3'
miRNA:   3'- -GGCUGUC---------CUACGCGGCGUacUCGgCg -5'
12821 3' -57.8 NC_003387.1 + 34324 0.66 0.561995
Target:  5'- uCCGguugaACAGGuagGCGCCGag-GAuGCCGUc -3'
miRNA:   3'- -GGC-----UGUCCua-CGCGGCguaCU-CGGCG- -5'
12821 3' -57.8 NC_003387.1 + 18832 0.66 0.561995
Target:  5'- gCCGACGGGu--CGCCGCccAUGuGCauguGCa -3'
miRNA:   3'- -GGCUGUCCuacGCGGCG--UACuCGg---CG- -5'
12821 3' -57.8 NC_003387.1 + 20635 0.66 0.561995
Target:  5'- aCCGGCGGGcaAUGUGCCGCuc---CCGg -3'
miRNA:   3'- -GGCUGUCC--UACGCGGCGuacucGGCg -5'
12821 3' -57.8 NC_003387.1 + 48940 0.66 0.561995
Target:  5'- uUCGugcuCAGcuucGAgGCGCUGCGUGAGCUGg -3'
miRNA:   3'- -GGCu---GUC----CUaCGCGGCGUACUCGGCg -5'
12821 3' -57.8 NC_003387.1 + 14503 0.66 0.560935
Target:  5'- gCCGcggccauACAGG-UGCGCCuGCGUGcgguacucggcGGCCGg -3'
miRNA:   3'- -GGC-------UGUCCuACGCGG-CGUAC-----------UCGGCg -5'
12821 3' -57.8 NC_003387.1 + 24163 0.66 0.551418
Target:  5'- gUCGACGGcGAU-CGCCGCcucGGUCGCc -3'
miRNA:   3'- -GGCUGUC-CUAcGCGGCGuacUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 44634 0.67 0.545102
Target:  5'- uCgGGCGGGuugGCGCCGaCcgGcagcggguuagcgcgGGCCGCc -3'
miRNA:   3'- -GgCUGUCCua-CGCGGC-GuaC---------------UCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 8667 0.67 0.540904
Target:  5'- gCGGCcuguGGuAUGCGCCGUucgGcacGCCGCu -3'
miRNA:   3'- gGCUGu---CC-UACGCGGCGua-Cu--CGGCG- -5'
12821 3' -57.8 NC_003387.1 + 48935 0.67 0.540904
Target:  5'- gCCGGCGGGuUGCuGgCGgGcGGGCUGCu -3'
miRNA:   3'- -GGCUGUCCuACG-CgGCgUaCUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 6834 0.67 0.540904
Target:  5'- gCGGCAGGucgaucGC-CCGCuc-GGCCGCg -3'
miRNA:   3'- gGCUGUCCua----CGcGGCGuacUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 11262 0.67 0.540904
Target:  5'- -gGGCGGGGgcagucaggGCGgCGUcaGGGCCGCg -3'
miRNA:   3'- ggCUGUCCUa--------CGCgGCGuaCUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 23827 0.67 0.540904
Target:  5'- aCGugAGG--GCGCCGCGccggGAcucggcgccguGCCGCu -3'
miRNA:   3'- gGCugUCCuaCGCGGCGUa---CU-----------CGGCG- -5'
12821 3' -57.8 NC_003387.1 + 51361 0.67 0.540904
Target:  5'- gCCGACGGcGAgGUGCCGUGgagcGAGgCCGa -3'
miRNA:   3'- -GGCUGUC-CUaCGCGGCGUa---CUC-GGCg -5'
12821 3' -57.8 NC_003387.1 + 48086 0.67 0.540904
Target:  5'- cUCGACGGGugGCGCUGCc---GCUGCg -3'
miRNA:   3'- -GGCUGUCCuaCGCGGCGuacuCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 37462 0.67 0.530457
Target:  5'- gCUGGCGGcGcUGCGCCGCcaaaagGuGCCGg -3'
miRNA:   3'- -GGCUGUC-CuACGCGGCGua----CuCGGCg -5'
12821 3' -57.8 NC_003387.1 + 31002 0.67 0.530457
Target:  5'- gCCGAgguCAGGAUcGgGCCgaGCGUGcGCCGg -3'
miRNA:   3'- -GGCU---GUCCUA-CgCGG--CGUACuCGGCg -5'
12821 3' -57.8 NC_003387.1 + 44442 0.67 0.530457
Target:  5'- gCCGACGcgcacGAgGCGCUGCGcGAGgCGCu -3'
miRNA:   3'- -GGCUGUc----CUaCGCGGCGUaCUCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.