miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12821 3' -57.8 NC_003387.1 + 47931 0.82 0.057071
Target:  5'- gCGGCAGGcAUGggcacgaCGCCGUGUGGGCCGCg -3'
miRNA:   3'- gGCUGUCC-UAC-------GCGGCGUACUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 23945 0.69 0.430974
Target:  5'- cUCGACcGGGgcaCGgCGaCAUGGGCCGCu -3'
miRNA:   3'- -GGCUGuCCUac-GCgGC-GUACUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 39608 0.68 0.440443
Target:  5'- gCCGACGaguGGAU-CGCCgagguggcgGCAUGAGCCu- -3'
miRNA:   3'- -GGCUGU---CCUAcGCGG---------CGUACUCGGcg -5'
12821 3' -57.8 NC_003387.1 + 39766 0.66 0.604767
Target:  5'- gCCGACGcGGUGCGCaagCGCAacgaGGCCaGCg -3'
miRNA:   3'- -GGCUGUcCUACGCG---GCGUac--UCGG-CG- -5'
12821 3' -57.8 NC_003387.1 + 46296 0.74 0.214051
Target:  5'- gCCGAgCAGGcgGCGCaGC--GGGCCGCu -3'
miRNA:   3'- -GGCU-GUCCuaCGCGgCGuaCUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 13501 0.71 0.297183
Target:  5'- cCCGGCGGGuu-CGCCGgugGAGUCGCu -3'
miRNA:   3'- -GGCUGUCCuacGCGGCguaCUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 43118 0.71 0.319612
Target:  5'- gCGACGGcGcgGCGCCGCggugGUGGGCguuccugcacCGCa -3'
miRNA:   3'- gGCUGUC-CuaCGCGGCG----UACUCG----------GCG- -5'
12821 3' -57.8 NC_003387.1 + 29410 0.7 0.335258
Target:  5'- gCCGggcGCAGGAggagGcCGCCGCAgcGGcCCGCg -3'
miRNA:   3'- -GGC---UGUCCUa---C-GCGGCGUacUC-GGCG- -5'
12821 3' -57.8 NC_003387.1 + 30692 0.69 0.4033
Target:  5'- aCCGGCGGGGgcguuuucgUGCGCCuGCG-GGG-CGCu -3'
miRNA:   3'- -GGCUGUCCU---------ACGCGG-CGUaCUCgGCG- -5'
12821 3' -57.8 NC_003387.1 + 32325 0.69 0.421625
Target:  5'- cCCGACAuGGAc-CGCUGCGgcUGAucGCCGCc -3'
miRNA:   3'- -GGCUGU-CCUacGCGGCGU--ACU--CGGCG- -5'
12821 3' -57.8 NC_003387.1 + 51160 0.69 0.4033
Target:  5'- aCGACGGGggGCGCCgGUAUGcacguacGCCugGCg -3'
miRNA:   3'- gGCUGUCCuaCGCGG-CGUACu------CGG--CG- -5'
12821 3' -57.8 NC_003387.1 + 33753 0.69 0.394328
Target:  5'- cCCGGCAagggcaacGGcgGCGCCGC--GAGCgGUu -3'
miRNA:   3'- -GGCUGU--------CCuaCGCGGCGuaCUCGgCG- -5'
12821 3' -57.8 NC_003387.1 + 17154 0.8 0.075769
Target:  5'- aCCGGCGGcccgcgcugagcuGGUGCGCCGCcUGGGCgGCg -3'
miRNA:   3'- -GGCUGUC-------------CUACGCGGCGuACUCGgCG- -5'
12821 3' -57.8 NC_003387.1 + 20963 0.69 0.4124
Target:  5'- uCCgGGCAGGGgcggGCaacGCCGCGaauGCCGCg -3'
miRNA:   3'- -GG-CUGUCCUa---CG---CGGCGUacuCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 21246 0.75 0.182904
Target:  5'- gUCGGCAuGGUGCGCCGCGacgagGAGUCGg -3'
miRNA:   3'- -GGCUGUcCUACGCGGCGUa----CUCGGCg -5'
12821 3' -57.8 NC_003387.1 + 18490 0.7 0.343288
Target:  5'- aCCGcACGGuc-GUGCCGCuUGAGCCGg -3'
miRNA:   3'- -GGC-UGUCcuaCGCGGCGuACUCGGCg -5'
12821 3' -57.8 NC_003387.1 + 12391 0.69 0.421625
Target:  5'- gCCGcugcuGCAGGcgaucaacuccgGUGCGCCGCuguggGAGCUGa -3'
miRNA:   3'- -GGC-----UGUCC------------UACGCGGCGua---CUCGGCg -5'
12821 3' -57.8 NC_003387.1 + 27263 0.68 0.43854
Target:  5'- cCCGGCaugccuggucgcgcgAGGAgaaCGCCGCAcuggcggcccuugaGAGCCGCg -3'
miRNA:   3'- -GGCUG---------------UCCUac-GCGGCGUa-------------CUCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 27708 0.75 0.182904
Target:  5'- cCCGACAGGc--CGCUGCAUaucAGCCGCc -3'
miRNA:   3'- -GGCUGUCCuacGCGGCGUAc--UCGGCG- -5'
12821 3' -57.8 NC_003387.1 + 30106 0.71 0.304521
Target:  5'- aCGGCGGGuacCGCCGCAaGGGCCu- -3'
miRNA:   3'- gGCUGUCCuacGCGGCGUaCUCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.