miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12821 5' -56.2 NC_003387.1 + 17530 0.66 0.636818
Target:  5'- gCAGCG-GCUCgGCcGGUAUCCGGUc- -3'
miRNA:   3'- -GUCGCgCGGGaCGcUCAUAGGCUAuu -5'
12821 5' -56.2 NC_003387.1 + 26233 0.66 0.636818
Target:  5'- aCAGCGuCGCCCcgGCGAucgccGUG-CUGAUGGu -3'
miRNA:   3'- -GUCGC-GCGGGa-CGCU-----CAUaGGCUAUU- -5'
12821 5' -56.2 NC_003387.1 + 46662 0.66 0.633474
Target:  5'- aCGGUGCuGCCCUGCuuGGccgcggccagcagcGUGUCCGAg-- -3'
miRNA:   3'- -GUCGCG-CGGGACG--CU--------------CAUAGGCUauu -5'
12821 5' -56.2 NC_003387.1 + 42745 0.66 0.603409
Target:  5'- gGGUGCGCCCUGCGGcggAUUCu---- -3'
miRNA:   3'- gUCGCGCGGGACGCUca-UAGGcuauu -5'
12821 5' -56.2 NC_003387.1 + 10041 0.66 0.581246
Target:  5'- aAGCGCGCCgaggGCGcGGUGUcggCCGGUAu -3'
miRNA:   3'- gUCGCGCGGga--CGC-UCAUA---GGCUAUu -5'
12821 5' -56.2 NC_003387.1 + 44314 0.67 0.570226
Target:  5'- -cGCGCGCaCCgGCGAGgccCCGAc-- -3'
miRNA:   3'- guCGCGCG-GGaCGCUCauaGGCUauu -5'
12821 5' -56.2 NC_003387.1 + 12414 0.67 0.570226
Target:  5'- cCGGUGCGCCgCUGUGGGag-CUGAUu- -3'
miRNA:   3'- -GUCGCGCGG-GACGCUCauaGGCUAuu -5'
12821 5' -56.2 NC_003387.1 + 29769 0.67 0.558163
Target:  5'- cCGGgGCGCCCcacgcggucagcuUGCGcguGUAUCCGGc-- -3'
miRNA:   3'- -GUCgCGCGGG-------------ACGCu--CAUAGGCUauu -5'
12821 5' -56.2 NC_003387.1 + 40741 0.67 0.558163
Target:  5'- aAGCGCGCCCUcgacaaggcgggcGuCGAGUAcaCCGAg-- -3'
miRNA:   3'- gUCGCGCGGGA-------------C-GCUCAUa-GGCUauu -5'
12821 5' -56.2 NC_003387.1 + 38232 0.67 0.52674
Target:  5'- aCAGCGCGCCCUuaGuGgccucgCCGAg-- -3'
miRNA:   3'- -GUCGCGCGGGAcgCuCaua---GGCUauu -5'
12821 5' -56.2 NC_003387.1 + 49830 0.68 0.494956
Target:  5'- -uGcCGCGCCCggcgaGCGAGUuccugCCGAUGu -3'
miRNA:   3'- guC-GCGCGGGa----CGCUCAua---GGCUAUu -5'
12821 5' -56.2 NC_003387.1 + 30063 0.68 0.464074
Target:  5'- gAGCGCGCCCUGaCGGccg-CCGGg-- -3'
miRNA:   3'- gUCGCGCGGGAC-GCUcauaGGCUauu -5'
12821 5' -56.2 NC_003387.1 + 29874 0.69 0.454004
Target:  5'- uCAGUGCGCCUUGCGcg---CCGAUc- -3'
miRNA:   3'- -GUCGCGCGGGACGCucauaGGCUAuu -5'
12821 5' -56.2 NC_003387.1 + 14796 0.69 0.414961
Target:  5'- uGGCGUGCCCgGCG-GUG-CCGAg-- -3'
miRNA:   3'- gUCGCGCGGGaCGCuCAUaGGCUauu -5'
12821 5' -56.2 NC_003387.1 + 42081 0.71 0.318963
Target:  5'- -cGCGCGUgCUGCGGGUGcCCGGc-- -3'
miRNA:   3'- guCGCGCGgGACGCUCAUaGGCUauu -5'
12821 5' -56.2 NC_003387.1 + 14101 0.72 0.28844
Target:  5'- cCAGCGCGgCCUGCGGG---CCGAa-- -3'
miRNA:   3'- -GUCGCGCgGGACGCUCauaGGCUauu -5'
12821 5' -56.2 NC_003387.1 + 41139 0.74 0.216393
Target:  5'- gCAGCGCGCCgacggccgCUGCGAGUGUCagggCGAg-- -3'
miRNA:   3'- -GUCGCGCGG--------GACGCUCAUAG----GCUauu -5'
12821 5' -56.2 NC_003387.1 + 27283 1.06 0.001075
Target:  5'- gCAGCGCGCCCUGCGAGUAUCCGAUAAg -3'
miRNA:   3'- -GUCGCGCGGGACGCUCAUAGGCUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.