miRNA display CGI


Results 1 - 20 of 245 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12822 3' -55.4 NC_003387.1 + 21574 0.66 0.696012
Target:  5'- cGAGCugAuCCuGCACGACucgauguucucgGGCgGCGCc -3'
miRNA:   3'- -CUUGugUcGGuCGUGCUG------------UCGgUGCG- -5'
12822 3' -55.4 NC_003387.1 + 24773 0.66 0.696012
Target:  5'- cGAGCAC-GCCgAGCGCcccGACcgAGCC-CGCc -3'
miRNA:   3'- -CUUGUGuCGG-UCGUG---CUG--UCGGuGCG- -5'
12822 3' -55.4 NC_003387.1 + 44890 0.66 0.696012
Target:  5'- uGACGCAGCCgccgGGCGCGcuauccguaucGCGucGCCGgGCu -3'
miRNA:   3'- cUUGUGUCGG----UCGUGC-----------UGU--CGGUgCG- -5'
12822 3' -55.4 NC_003387.1 + 28157 0.66 0.696012
Target:  5'- cGAGCcCGGCCAGCuCGGCucGCCGu-- -3'
miRNA:   3'- -CUUGuGUCGGUCGuGCUGu-CGGUgcg -5'
12822 3' -55.4 NC_003387.1 + 11614 0.66 0.696012
Target:  5'- cGGGCAUcacgaaGGCC---GCGACcGCCGCGCa -3'
miRNA:   3'- -CUUGUG------UCGGucgUGCUGuCGGUGCG- -5'
12822 3' -55.4 NC_003387.1 + 24799 0.66 0.696012
Target:  5'- gGGGuCGCGGCCgaccuGGCGCaGCAGCUcgGCGUa -3'
miRNA:   3'- -CUU-GUGUCGG-----UCGUGcUGUCGG--UGCG- -5'
12822 3' -55.4 NC_003387.1 + 2238 0.66 0.696012
Target:  5'- cAGCGuCAGCCAGUugcCGACGaCCuCGCg -3'
miRNA:   3'- cUUGU-GUCGGUCGu--GCUGUcGGuGCG- -5'
12822 3' -55.4 NC_003387.1 + 10011 0.66 0.694916
Target:  5'- --cCGCGGCCgGGCgACGACgacgacgAGCCgaaGCGCg -3'
miRNA:   3'- cuuGUGUCGG-UCG-UGCUG-------UCGG---UGCG- -5'
12822 3' -55.4 NC_003387.1 + 34415 0.66 0.68943
Target:  5'- cGACGCAcucGCCGGCauuccugcgcagcaaACG-CAGCCGgGCc -3'
miRNA:   3'- cUUGUGU---CGGUCG---------------UGCuGUCGGUgCG- -5'
12822 3' -55.4 NC_003387.1 + 195 0.66 0.685031
Target:  5'- cGACuCGGCC--CGCGACAuuGCCGCGUu -3'
miRNA:   3'- cUUGuGUCGGucGUGCUGU--CGGUGCG- -5'
12822 3' -55.4 NC_003387.1 + 12376 0.66 0.685031
Target:  5'- cGAuCACGGCCugcuGCACGGCuuuCCGCa- -3'
miRNA:   3'- -CUuGUGUCGGu---CGUGCUGuc-GGUGcg -5'
12822 3' -55.4 NC_003387.1 + 15897 0.66 0.685031
Target:  5'- cGAGgACAGCCcGCAcccCGAgcUGGCCGCGa -3'
miRNA:   3'- -CUUgUGUCGGuCGU---GCU--GUCGGUGCg -5'
12822 3' -55.4 NC_003387.1 + 46282 0.66 0.685031
Target:  5'- cGACGCcGCCcacGaccuCGACGGCCugGCc -3'
miRNA:   3'- cUUGUGuCGGu--Cgu--GCUGUCGGugCG- -5'
12822 3' -55.4 NC_003387.1 + 14654 0.66 0.685031
Target:  5'- -cGCACAGUgacgCGGCGCucgcuCAGCCAcCGCc -3'
miRNA:   3'- cuUGUGUCG----GUCGUGcu---GUCGGU-GCG- -5'
12822 3' -55.4 NC_003387.1 + 25161 0.66 0.68393
Target:  5'- cGACGCAGguucggcUCGGCGCGGUGGCCccgGCGCc -3'
miRNA:   3'- cUUGUGUC-------GGUCGUGCUGUCGG---UGCG- -5'
12822 3' -55.4 NC_003387.1 + 8025 0.66 0.673998
Target:  5'- ----uCGGCCcGCugG-UGGCCGCGCg -3'
miRNA:   3'- cuuguGUCGGuCGugCuGUCGGUGCG- -5'
12822 3' -55.4 NC_003387.1 + 21642 0.66 0.673998
Target:  5'- cGAGCGuCAGCUcGUcgaccgcgGCGGCGGCCGaGCa -3'
miRNA:   3'- -CUUGU-GUCGGuCG--------UGCUGUCGGUgCG- -5'
12822 3' -55.4 NC_003387.1 + 27500 0.66 0.673998
Target:  5'- ---aGCGGCUguGGCGCGAagaucCGGCCGcCGCc -3'
miRNA:   3'- cuugUGUCGG--UCGUGCU-----GUCGGU-GCG- -5'
12822 3' -55.4 NC_003387.1 + 47007 0.66 0.673998
Target:  5'- -uGC-CGGUCAGCgACGACgcGGgCACGCc -3'
miRNA:   3'- cuUGuGUCGGUCG-UGCUG--UCgGUGCG- -5'
12822 3' -55.4 NC_003387.1 + 7762 0.66 0.673998
Target:  5'- cGAuCGCGGCCugAGcCGCGGCcugAGCCuuCGCg -3'
miRNA:   3'- -CUuGUGUCGG--UC-GUGCUG---UCGGu-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.