miRNA display CGI


Results 1 - 20 of 245 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12822 3' -55.4 NC_003387.1 + 159 0.67 0.596238
Target:  5'- cGAGCugGGCCuGCuggcCGACGGCaagACGg -3'
miRNA:   3'- -CUUGugUCGGuCGu---GCUGUCGg--UGCg -5'
12822 3' -55.4 NC_003387.1 + 187 0.69 0.467844
Target:  5'- uGACGCccggccGCCAGCuCGGCGGCUuguCGCu -3'
miRNA:   3'- cUUGUGu-----CGGUCGuGCUGUCGGu--GCG- -5'
12822 3' -55.4 NC_003387.1 + 195 0.66 0.685031
Target:  5'- cGACuCGGCC--CGCGACAuuGCCGCGUu -3'
miRNA:   3'- cUUGuGUCGGucGUGCUGU--CGGUGCG- -5'
12822 3' -55.4 NC_003387.1 + 356 0.66 0.640701
Target:  5'- -cGCGCGGUCGaucuGCGCGAgCGGuuCCGCGCc -3'
miRNA:   3'- cuUGUGUCGGU----CGUGCU-GUC--GGUGCG- -5'
12822 3' -55.4 NC_003387.1 + 561 0.68 0.519937
Target:  5'- cGACAguGUCAGCGuCGAaugcGUCACGCg -3'
miRNA:   3'- cUUGUguCGGUCGU-GCUgu--CGGUGCG- -5'
12822 3' -55.4 NC_003387.1 + 620 0.7 0.40628
Target:  5'- cGAGCAgGGCgAGggcagcgucgccgcCGCGGCAGCgACGCc -3'
miRNA:   3'- -CUUGUgUCGgUC--------------GUGCUGUCGgUGCG- -5'
12822 3' -55.4 NC_003387.1 + 749 0.75 0.201894
Target:  5'- aGGAUGCGGUCGGCcaccGCGGCAGCgACGUc -3'
miRNA:   3'- -CUUGUGUCGGUCG----UGCUGUCGgUGCG- -5'
12822 3' -55.4 NC_003387.1 + 828 0.66 0.639589
Target:  5'- cGACgACGGCCuGUACG-CGGCCGacauguuCGCa -3'
miRNA:   3'- cUUG-UGUCGGuCGUGCuGUCGGU-------GCG- -5'
12822 3' -55.4 NC_003387.1 + 864 0.72 0.330147
Target:  5'- cGAuCACcggGGCCAcCGCGGCAGCgACGCc -3'
miRNA:   3'- -CUuGUG---UCGGUcGUGCUGUCGgUGCG- -5'
12822 3' -55.4 NC_003387.1 + 1018 0.67 0.618445
Target:  5'- ---uGCGGCCuuGCguuuGCGGgucacCAGCCACGCa -3'
miRNA:   3'- cuugUGUCGGu-CG----UGCU-----GUCGGUGCG- -5'
12822 3' -55.4 NC_003387.1 + 1078 0.66 0.640701
Target:  5'- cGGCACuauuGCCAGUgucagggccucgACGGCGGUCACa- -3'
miRNA:   3'- cUUGUGu---CGGUCG------------UGCUGUCGGUGcg -5'
12822 3' -55.4 NC_003387.1 + 1604 0.68 0.541416
Target:  5'- uGGCAuguuCGGCCgGGCGCGuguggGCAGCCucGCGCg -3'
miRNA:   3'- cUUGU----GUCGG-UCGUGC-----UGUCGG--UGCG- -5'
12822 3' -55.4 NC_003387.1 + 1628 0.67 0.607331
Target:  5'- cGGCGCGuGCUGGCugauggacgACGACGGCCGC-Ca -3'
miRNA:   3'- cUUGUGU-CGGUCG---------UGCUGUCGGUGcG- -5'
12822 3' -55.4 NC_003387.1 + 1752 0.68 0.552267
Target:  5'- ---gACAGCaugAGCcCGGCGGCgGCGCu -3'
miRNA:   3'- cuugUGUCGg--UCGuGCUGUCGgUGCG- -5'
12822 3' -55.4 NC_003387.1 + 2238 0.66 0.696012
Target:  5'- cAGCGuCAGCCAGUugcCGACGaCCuCGCg -3'
miRNA:   3'- cUUGU-GUCGGUCGu--GCUGUcGGuGCG- -5'
12822 3' -55.4 NC_003387.1 + 2719 0.76 0.181113
Target:  5'- cGACGCGGgCGGCG-GGCAgGCCACGCa -3'
miRNA:   3'- cUUGUGUCgGUCGUgCUGU-CGGUGCG- -5'
12822 3' -55.4 NC_003387.1 + 2894 0.69 0.467844
Target:  5'- gGAACucGCucGCCgGGCGCGGCAGgCCGCGg -3'
miRNA:   3'- -CUUG--UGu-CGG-UCGUGCUGUC-GGUGCg -5'
12822 3' -55.4 NC_003387.1 + 3551 0.71 0.399758
Target:  5'- --cCGCcGCCuGCGCGACcGCCuGCGCg -3'
miRNA:   3'- cuuGUGuCGGuCGUGCUGuCGG-UGCG- -5'
12822 3' -55.4 NC_003387.1 + 3729 0.75 0.230752
Target:  5'- --cCACAGCCAcGCGauCGACGGCCGCa- -3'
miRNA:   3'- cuuGUGUCGGU-CGU--GCUGUCGGUGcg -5'
12822 3' -55.4 NC_003387.1 + 3842 0.67 0.607331
Target:  5'- cGGCGCGGUaggCGGCGcCGACgauccGGCUGCGCa -3'
miRNA:   3'- cUUGUGUCG---GUCGU-GCUG-----UCGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.