miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12822 5' -56.7 NC_003387.1 + 38538 0.66 0.657828
Target:  5'- aCGGCGUcaugGUGGcgcaGAGCaaGCGCaCCAUGa -3'
miRNA:   3'- -GCUGCAa---CGCCag--CUCG--UGCG-GGUAC- -5'
12822 5' -56.7 NC_003387.1 + 11598 0.66 0.656743
Target:  5'- gCGAUGgccgUGUGGUCGGGCAUcacgaagGCCgCGa- -3'
miRNA:   3'- -GCUGCa---ACGCCAGCUCGUG-------CGG-GUac -5'
12822 5' -56.7 NC_003387.1 + 27984 0.66 0.648052
Target:  5'- uGcCGUUGCGGcgcccucgauuucggCGAGCACGCgCuUGg -3'
miRNA:   3'- gCuGCAACGCCa--------------GCUCGUGCGgGuAC- -5'
12822 5' -56.7 NC_003387.1 + 34351 0.66 0.646965
Target:  5'- uCGACGUcgacGUGGUCGAGguCGgcaaaCCCAa- -3'
miRNA:   3'- -GCUGCAa---CGCCAGCUCguGC-----GGGUac -5'
12822 5' -56.7 NC_003387.1 + 15417 0.66 0.640441
Target:  5'- aCGuCGgcGCGGUCGAcgaccgcgccgacgaGCGCGCCa--- -3'
miRNA:   3'- -GCuGCaaCGCCAGCU---------------CGUGCGGguac -5'
12822 5' -56.7 NC_003387.1 + 29989 0.66 0.636089
Target:  5'- aGGCGa-GCGaccgCGAGUACGCCCGa- -3'
miRNA:   3'- gCUGCaaCGCca--GCUCGUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 48845 0.66 0.636089
Target:  5'- gCGACGca-CGG-CGuGCACGCCC-UGg -3'
miRNA:   3'- -GCUGCaacGCCaGCuCGUGCGGGuAC- -5'
12822 5' -56.7 NC_003387.1 + 34213 0.66 0.629561
Target:  5'- -cACGUcGCGGUCGgugcccggcucaagcGGCACGaCCGUGc -3'
miRNA:   3'- gcUGCAaCGCCAGC---------------UCGUGCgGGUAC- -5'
12822 5' -56.7 NC_003387.1 + 28094 0.66 0.62521
Target:  5'- gGGCGagGUGcGUCGGGU-CGCCCAg- -3'
miRNA:   3'- gCUGCaaCGC-CAGCUCGuGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 12565 0.66 0.614336
Target:  5'- uGGCGgcugGCGGUCGcAGgACGCUUAc- -3'
miRNA:   3'- gCUGCaa--CGCCAGC-UCgUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 41597 0.66 0.614336
Target:  5'- gCGGCGgucaGCuuGUCGAaCACGCCCAUa -3'
miRNA:   3'- -GCUGCaa--CGc-CAGCUcGUGCGGGUAc -5'
12822 5' -56.7 NC_003387.1 + 40389 0.67 0.603478
Target:  5'- uCGACGUcgGCGG-CGAGC-UGCaCGUGa -3'
miRNA:   3'- -GCUGCAa-CGCCaGCUCGuGCGgGUAC- -5'
12822 5' -56.7 NC_003387.1 + 9770 0.67 0.603478
Target:  5'- uGcCGggGCGGcacuuggCGAGCGCGaCCAUGu -3'
miRNA:   3'- gCuGCaaCGCCa------GCUCGUGCgGGUAC- -5'
12822 5' -56.7 NC_003387.1 + 34127 0.67 0.603478
Target:  5'- uCGACGUcGCGGUgcgcgaacucgaCGAGCAccagggcguCGCCCu-- -3'
miRNA:   3'- -GCUGCAaCGCCA------------GCUCGU---------GCGGGuac -5'
12822 5' -56.7 NC_003387.1 + 41713 0.67 0.603478
Target:  5'- cCGACGaagGCGGcCgGGGCACGgCCGa- -3'
miRNA:   3'- -GCUGCaa-CGCCaG-CUCGUGCgGGUac -5'
12822 5' -56.7 NC_003387.1 + 36151 0.67 0.592643
Target:  5'- cCGACGagGCGGUCGGccGgAUGCUCAc- -3'
miRNA:   3'- -GCUGCaaCGCCAGCU--CgUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 2718 0.67 0.581841
Target:  5'- gCGACGcggGCGG-CGGGCAgGCCaCGc- -3'
miRNA:   3'- -GCUGCaa-CGCCaGCUCGUgCGG-GUac -5'
12822 5' -56.7 NC_003387.1 + 38208 0.67 0.581841
Target:  5'- uGuCGUUGCccgucgGGUCGAucgacaGCGCGCCCuuaGUGg -3'
miRNA:   3'- gCuGCAACG------CCAGCU------CGUGCGGG---UAC- -5'
12822 5' -56.7 NC_003387.1 + 32493 0.67 0.575379
Target:  5'- cCGGCGccGUGGUgCGAcgacugccgcugcguGCACGCCCGg- -3'
miRNA:   3'- -GCUGCaaCGCCA-GCU---------------CGUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 3764 0.67 0.57108
Target:  5'- aCGACGcaGUGGUacgcCGAGCAgccCGCCCGc- -3'
miRNA:   3'- -GCUGCaaCGCCA----GCUCGU---GCGGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.