Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12822 | 5' | -56.7 | NC_003387.1 | + | 29669 | 0.67 | 0.57108 |
Target: 5'- aCGGCGUagUGCGuGaUCG-GCACGCCgCcgGg -3' miRNA: 3'- -GCUGCA--ACGC-C-AGCuCGUGCGG-GuaC- -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 38395 | 0.67 | 0.57108 |
Target: 5'- -cGCGUUGaGGUUGGGCugaaucgccACGCCCAg- -3' miRNA: 3'- gcUGCAACgCCAGCUCG---------UGCGGGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 5696 | 0.67 | 0.57108 |
Target: 5'- gGugGcgGCGGUCaaGGGCGUGCCCGc- -3' miRNA: 3'- gCugCaaCGCCAG--CUCGUGCGGGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 29691 | 0.68 | 0.539119 |
Target: 5'- uCGACGUgGCcgaGGUCGAgGCgcucggcgGCGCCCAg- -3' miRNA: 3'- -GCUGCAaCG---CCAGCU-CG--------UGCGGGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 33809 | 0.68 | 0.528597 |
Target: 5'- -uGCGUaG-GGUCGAGCGCGCCg--- -3' miRNA: 3'- gcUGCAaCgCCAGCUCGUGCGGguac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 22661 | 0.68 | 0.50779 |
Target: 5'- cCGGCG--GCcGUCaGGGCGCGCUCGUGg -3' miRNA: 3'- -GCUGCaaCGcCAG-CUCGUGCGGGUAC- -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 20244 | 0.68 | 0.50779 |
Target: 5'- aCGGCGccGgGGUCGAcGCaaACGCCCGc- -3' miRNA: 3'- -GCUGCaaCgCCAGCU-CG--UGCGGGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 18473 | 0.68 | 0.497516 |
Target: 5'- uCGGCGaucaGcCGGUCGAGCGC-CCCGa- -3' miRNA: 3'- -GCUGCaa--C-GCCAGCUCGUGcGGGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 46647 | 0.68 | 0.487337 |
Target: 5'- aCGACGccccgGCGGUCGucauGGUGCGCUCGa- -3' miRNA: 3'- -GCUGCaa---CGCCAGC----UCGUGCGGGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 3014 | 0.69 | 0.467281 |
Target: 5'- cCGGCGUUGCu-UCG-GCACGUUCAUGc -3' miRNA: 3'- -GCUGCAACGccAGCuCGUGCGGGUAC- -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 48554 | 0.69 | 0.44766 |
Target: 5'- aCGAgcCGUUGCGGUCuGGCACcGCCa--- -3' miRNA: 3'- -GCU--GCAACGCCAGcUCGUG-CGGguac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 37957 | 0.69 | 0.44766 |
Target: 5'- aGACa--GCGGUCGAGCACGacaacgaCCAg- -3' miRNA: 3'- gCUGcaaCGCCAGCUCGUGCg------GGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 48631 | 0.69 | 0.441863 |
Target: 5'- aCGGCGccGCGGgucgCGAGCAUGCggcagaacccgcacgCCGUGa -3' miRNA: 3'- -GCUGCaaCGCCa---GCUCGUGCG---------------GGUAC- -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 22144 | 0.69 | 0.438022 |
Target: 5'- gCGACGUUcacugGCGG-CG-GCACGCUCAg- -3' miRNA: 3'- -GCUGCAA-----CGCCaGCuCGUGCGGGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 4150 | 0.7 | 0.400702 |
Target: 5'- uCGGCGagGCGGgcgUCGAuGCACGCCUg-- -3' miRNA: 3'- -GCUGCaaCGCC---AGCU-CGUGCGGGuac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 22343 | 0.71 | 0.374076 |
Target: 5'- cCGGCGc--CGGUgGGGCugGCCCAg- -3' miRNA: 3'- -GCUGCaacGCCAgCUCGugCGGGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 39081 | 0.71 | 0.374076 |
Target: 5'- -cACGUcGCGGUCGGGCcguucGCGCUCGUc -3' miRNA: 3'- gcUGCAaCGCCAGCUCG-----UGCGGGUAc -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 13337 | 0.72 | 0.324529 |
Target: 5'- aGACGUU-CGuGUCGGGCAUGCUCGa- -3' miRNA: 3'- gCUGCAAcGC-CAGCUCGUGCGGGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 49666 | 0.73 | 0.289964 |
Target: 5'- uCGACGUcggaGCGGUCGAGCAgugcugagcgugcaGCCCGg- -3' miRNA: 3'- -GCUGCAa---CGCCAGCUCGUg-------------CGGGUac -5' |
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12822 | 5' | -56.7 | NC_003387.1 | + | 27869 | 0.73 | 0.273107 |
Target: 5'- uCGAcacCGgcGCGGUCGAGCAggaGCCCGg- -3' miRNA: 3'- -GCU---GCaaCGCCAGCUCGUg--CGGGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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