miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12822 5' -56.7 NC_003387.1 + 27869 0.73 0.273107
Target:  5'- uCGAcacCGgcGCGGUCGAGCAggaGCCCGg- -3'
miRNA:   3'- -GCU---GCaaCGCCAGCUCGUg--CGGGUac -5'
12822 5' -56.7 NC_003387.1 + 12565 0.66 0.614336
Target:  5'- uGGCGgcugGCGGUCGcAGgACGCUUAc- -3'
miRNA:   3'- gCUGCaa--CGCCAGC-UCgUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 48845 0.66 0.636089
Target:  5'- gCGACGca-CGG-CGuGCACGCCC-UGg -3'
miRNA:   3'- -GCUGCaacGCCaGCuCGUGCGGGuAC- -5'
12822 5' -56.7 NC_003387.1 + 38538 0.66 0.657828
Target:  5'- aCGGCGUcaugGUGGcgcaGAGCaaGCGCaCCAUGa -3'
miRNA:   3'- -GCUGCAa---CGCCag--CUCG--UGCG-GGUAC- -5'
12822 5' -56.7 NC_003387.1 + 39081 0.71 0.374076
Target:  5'- -cACGUcGCGGUCGGGCcguucGCGCUCGUc -3'
miRNA:   3'- gcUGCAaCGCCAGCUCG-----UGCGGGUAc -5'
12822 5' -56.7 NC_003387.1 + 22144 0.69 0.438022
Target:  5'- gCGACGUUcacugGCGG-CG-GCACGCUCAg- -3'
miRNA:   3'- -GCUGCAA-----CGCCaGCuCGUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 46647 0.68 0.487337
Target:  5'- aCGACGccccgGCGGUCGucauGGUGCGCUCGa- -3'
miRNA:   3'- -GCUGCaa---CGCCAGC----UCGUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 29691 0.68 0.539119
Target:  5'- uCGACGUgGCcgaGGUCGAgGCgcucggcgGCGCCCAg- -3'
miRNA:   3'- -GCUGCAaCG---CCAGCU-CG--------UGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 32493 0.67 0.575379
Target:  5'- cCGGCGccGUGGUgCGAcgacugccgcugcguGCACGCCCGg- -3'
miRNA:   3'- -GCUGCaaCGCCA-GCU---------------CGUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 41713 0.67 0.603478
Target:  5'- cCGACGaagGCGGcCgGGGCACGgCCGa- -3'
miRNA:   3'- -GCUGCaa-CGCCaG-CUCGUGCgGGUac -5'
12822 5' -56.7 NC_003387.1 + 2718 0.67 0.581841
Target:  5'- gCGACGcggGCGG-CGGGCAgGCCaCGc- -3'
miRNA:   3'- -GCUGCaa-CGCCaGCUCGUgCGG-GUac -5'
12822 5' -56.7 NC_003387.1 + 3764 0.67 0.57108
Target:  5'- aCGACGcaGUGGUacgcCGAGCAgccCGCCCGc- -3'
miRNA:   3'- -GCUGCaaCGCCA----GCUCGU---GCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 49666 0.73 0.289964
Target:  5'- uCGACGUcggaGCGGUCGAGCAgugcugagcgugcaGCCCGg- -3'
miRNA:   3'- -GCUGCAa---CGCCAGCUCGUg-------------CGGGUac -5'
12822 5' -56.7 NC_003387.1 + 36151 0.67 0.592643
Target:  5'- cCGACGagGCGGUCGGccGgAUGCUCAc- -3'
miRNA:   3'- -GCUGCaaCGCCAGCU--CgUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 13337 0.72 0.324529
Target:  5'- aGACGUU-CGuGUCGGGCAUGCUCGa- -3'
miRNA:   3'- gCUGCAAcGC-CAGCUCGUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 5696 0.67 0.57108
Target:  5'- gGugGcgGCGGUCaaGGGCGUGCCCGc- -3'
miRNA:   3'- gCugCaaCGCCAG--CUCGUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 40389 0.67 0.603478
Target:  5'- uCGACGUcgGCGG-CGAGC-UGCaCGUGa -3'
miRNA:   3'- -GCUGCAa-CGCCaGCUCGuGCGgGUAC- -5'
12822 5' -56.7 NC_003387.1 + 29989 0.66 0.636089
Target:  5'- aGGCGa-GCGaccgCGAGUACGCCCGa- -3'
miRNA:   3'- gCUGCaaCGCca--GCUCGUGCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 22343 0.71 0.374076
Target:  5'- cCGGCGc--CGGUgGGGCugGCCCAg- -3'
miRNA:   3'- -GCUGCaacGCCAgCUCGugCGGGUac -5'
12822 5' -56.7 NC_003387.1 + 37957 0.69 0.44766
Target:  5'- aGACa--GCGGUCGAGCACGacaacgaCCAg- -3'
miRNA:   3'- gCUGcaaCGCCAGCUCGUGCg------GGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.