miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12823 3' -54.3 NC_003387.1 + 50663 0.66 0.77214
Target:  5'- cACGAAcaugGCGCcGcCACCgCGGccagCUCGGCg -3'
miRNA:   3'- -UGCUU----UGCGuC-GUGG-GCCaa--GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 6608 0.66 0.77214
Target:  5'- cCGAGccacCGCAGCAgCCGGaacaUgUCGGCg -3'
miRNA:   3'- uGCUUu---GCGUCGUgGGCCa---AgAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 37789 0.66 0.76188
Target:  5'- cGCGccuGGGCGCAGCACCCGcGg--UCGcaGCa -3'
miRNA:   3'- -UGC---UUUGCGUCGUGGGC-CaagAGC--UG- -5'
12823 3' -54.3 NC_003387.1 + 9621 0.66 0.76188
Target:  5'- -aGAAGCacuGCAGCgACaaGGcUCUCGACa -3'
miRNA:   3'- ugCUUUG---CGUCG-UGggCCaAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 17719 0.66 0.76188
Target:  5'- uCGAGGCGguGCGcCCCGGcc--CGGCc -3'
miRNA:   3'- uGCUUUGCguCGU-GGGCCaagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 37837 0.66 0.76188
Target:  5'- aGCGAGgucGgGCAccccuGCGCCCGGcggcucgcCUCGACg -3'
miRNA:   3'- -UGCUU---UgCGU-----CGUGGGCCaa------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 12230 0.66 0.76188
Target:  5'- gGCGGu-CGcCAGCGCagCGGcgCUCGGCu -3'
miRNA:   3'- -UGCUuuGC-GUCGUGg-GCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 7828 0.66 0.757737
Target:  5'- uACGGAuAUGC-GCGCCCGGcggcugcgucagCUCGGCc -3'
miRNA:   3'- -UGCUU-UGCGuCGUGGGCCaa----------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 52716 0.66 0.751483
Target:  5'- cGCGAAcgauCGCGGCGCCCc--UCgCGGCa -3'
miRNA:   3'- -UGCUUu---GCGUCGUGGGccaAGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 52574 0.66 0.751483
Target:  5'- cGCGAGugGUAGCaaaccGCCCGGcgagCGAg -3'
miRNA:   3'- -UGCUUugCGUCG-----UGGGCCaagaGCUg -5'
12823 3' -54.3 NC_003387.1 + 23826 0.66 0.751483
Target:  5'- uACGugagGGCGCcGCGCCgGGa-CUCGGCg -3'
miRNA:   3'- -UGCu---UUGCGuCGUGGgCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 41799 0.66 0.751483
Target:  5'- cGCGAccuGGCGCA-CGCCUGGcagaUCaUCGACg -3'
miRNA:   3'- -UGCU---UUGCGUcGUGGGCCa---AG-AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 48827 0.66 0.751483
Target:  5'- gGCGGucagggucgGGCaGCGGCG-CCGGUUC-CGGCa -3'
miRNA:   3'- -UGCU---------UUG-CGUCGUgGGCCAAGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 37401 0.66 0.751483
Target:  5'- gACGAGccagucgucgccGCGCAGCACaaugucgccggugCCGGUgucgugcaacaucucCUCGGCg -3'
miRNA:   3'- -UGCUU------------UGCGUCGUG-------------GGCCAa--------------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 28020 0.66 0.740963
Target:  5'- gACGAG-CGCGGCAagCCGaucCUCGGCg -3'
miRNA:   3'- -UGCUUuGCGUCGUg-GGCcaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 11957 0.66 0.740963
Target:  5'- uCGAGGCGCA-C-CUCGGUguaUCGACg -3'
miRNA:   3'- uGCUUUGCGUcGuGGGCCAag-AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 38938 0.66 0.740963
Target:  5'- uGCG-AGCGCAGCGCgaCCGGgUCcauacCGACc -3'
miRNA:   3'- -UGCuUUGCGUCGUG--GGCCaAGa----GCUG- -5'
12823 3' -54.3 NC_003387.1 + 28458 0.66 0.740963
Target:  5'- gACGAGcugGCgGCGGCcCCCGaGgucaagCUCGACg -3'
miRNA:   3'- -UGCUU---UG-CGUCGuGGGC-Caa----GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 48387 0.66 0.73033
Target:  5'- uACGuuGCGCugguGCGCCU---UCUCGGCg -3'
miRNA:   3'- -UGCuuUGCGu---CGUGGGccaAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 35016 0.66 0.73033
Target:  5'- aGCuGAACGC-GCACCuguggCGGUUCUgGAUg -3'
miRNA:   3'- -UGcUUUGCGuCGUGG-----GCCAAGAgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.