miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12823 3' -54.3 NC_003387.1 + 6608 0.66 0.77214
Target:  5'- cCGAGccacCGCAGCAgCCGGaacaUgUCGGCg -3'
miRNA:   3'- uGCUUu---GCGUCGUgGGCCa---AgAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 50663 0.66 0.77214
Target:  5'- cACGAAcaugGCGCcGcCACCgCGGccagCUCGGCg -3'
miRNA:   3'- -UGCUU----UGCGuC-GUGG-GCCaa--GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 14672 0.67 0.675899
Target:  5'- cGCGAAcCGCGGCACgUGGgagUCgUGGCc -3'
miRNA:   3'- -UGCUUuGCGUCGUGgGCCa--AGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 41299 0.67 0.697879
Target:  5'- cACGAgcaccGACGaCAGCACCuCGGggC-CGAUc -3'
miRNA:   3'- -UGCU-----UUGC-GUCGUGG-GCCaaGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 2729 0.67 0.705514
Target:  5'- gGCGGGcaggccACGCAGCAgCCGGUgaacgugcgcgaggUCacCGACg -3'
miRNA:   3'- -UGCUU------UGCGUCGUgGGCCA--------------AGa-GCUG- -5'
12823 3' -54.3 NC_003387.1 + 34966 0.67 0.719598
Target:  5'- cGCGAuuuACGCGG-GCCUGGUgcccgUCGGCa -3'
miRNA:   3'- -UGCUu--UGCGUCgUGGGCCAag---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 43683 0.67 0.664839
Target:  5'- cGCGAuccuGGCGUggaucgccgacGGCGCCCgccaGGUgCUCGACg -3'
miRNA:   3'- -UGCU----UUGCG-----------UCGUGGG----CCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 2466 0.67 0.697879
Target:  5'- cCGAggUGCAcCGCCCGGcgCU-GACg -3'
miRNA:   3'- uGCUuuGCGUcGUGGGCCaaGAgCUG- -5'
12823 3' -54.3 NC_003387.1 + 49197 0.67 0.708776
Target:  5'- cUGggGCgGCGGCgggggcacugGCgCCGGUUCguUCGACa -3'
miRNA:   3'- uGCuuUG-CGUCG----------UG-GGCCAAG--AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 10505 0.67 0.708776
Target:  5'- -aGAucAGCGgGGCGCUCGG--CUCGGCg -3'
miRNA:   3'- ugCU--UUGCgUCGUGGGCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 24797 0.67 0.708776
Target:  5'- uCGggGuCGCGGCcgACCUGGcgcagcagCUCGGCg -3'
miRNA:   3'- uGCuuU-GCGUCG--UGGGCCaa------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 45825 0.67 0.708776
Target:  5'- gGCGAuAGCGCacuaGGCAgCCGGUgccaCGACg -3'
miRNA:   3'- -UGCU-UUGCG----UCGUgGGCCAaga-GCUG- -5'
12823 3' -54.3 NC_003387.1 + 10426 0.68 0.653749
Target:  5'- uACGGcuCGCGGCugUCGGcgggcaUCGACa -3'
miRNA:   3'- -UGCUuuGCGUCGugGGCCaag---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 46169 0.68 0.653749
Target:  5'- cGCGAccucguAACGCAGCGCCaGGga--CGACa -3'
miRNA:   3'- -UGCU------UUGCGUCGUGGgCCaagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 11706 0.68 0.620398
Target:  5'- cCGucGACGCAGUcgACCCGGccgUCGACg -3'
miRNA:   3'- uGCu-UUGCGUCG--UGGGCCaagAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 25558 0.68 0.619287
Target:  5'- cCGAGGgGCAGCagcuucgcgacgcGCUCGGauUUCUCGAUg -3'
miRNA:   3'- uGCUUUgCGUCG-------------UGGGCC--AAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 21982 0.68 0.631518
Target:  5'- ----uACGguGCGCCCGGUgaUCcCGGCc -3'
miRNA:   3'- ugcuuUGCguCGUGGGCCA--AGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 1720 0.68 0.631518
Target:  5'- aGCGGGccGgGCGGCGcauCCCGGUgcugaUCGACa -3'
miRNA:   3'- -UGCUU--UgCGUCGU---GGGCCAag---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 33196 0.68 0.631518
Target:  5'- uGCGGAucGCGCAGCGCaagcgcgaGGcccgCUCGGCg -3'
miRNA:   3'- -UGCUU--UGCGUCGUGgg------CCaa--GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 1116 0.69 0.598199
Target:  5'- cAUGAgcGACGCuagGGCGCaCGGUgugCUCGGCg -3'
miRNA:   3'- -UGCU--UUGCG---UCGUGgGCCAa--GAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.