miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12823 3' -54.3 NC_003387.1 + 26055 1.1 0.001013
Target:  5'- cACGAAACGCAGCACCCGGUUCUCGACg -3'
miRNA:   3'- -UGCUUUGCGUCGUGGGCCAAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 13296 0.78 0.182169
Target:  5'- cCGAGcuUGCGGCGCCCGGUcacCUCGACc -3'
miRNA:   3'- uGCUUu-GCGUCGUGGGCCAa--GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 46994 0.77 0.208572
Target:  5'- gACGAcgAGCGCGGgcCGCCUGGUgCUCGACu -3'
miRNA:   3'- -UGCU--UUGCGUC--GUGGGCCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 23066 0.74 0.307976
Target:  5'- gGCGAGGCGUucgAGCAgCCGGUUaCUCG-Cg -3'
miRNA:   3'- -UGCUUUGCG---UCGUgGGCCAA-GAGCuG- -5'
12823 3' -54.3 NC_003387.1 + 43117 0.74 0.323675
Target:  5'- cGCGAcGGCGCGGCGCCgCGGUggUgGGCg -3'
miRNA:   3'- -UGCU-UUGCGUCGUGG-GCCAagAgCUG- -5'
12823 3' -54.3 NC_003387.1 + 16308 0.73 0.356834
Target:  5'- cACGAAAUGCAGCucgGCgCCGGUg-UCGAUg -3'
miRNA:   3'- -UGCUUUGCGUCG---UG-GGCCAagAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 24301 0.73 0.356834
Target:  5'- cAUGAGccgcCGCAGCAgCCGGgucugCUCGGCg -3'
miRNA:   3'- -UGCUUu---GCGUCGUgGGCCaa---GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 19663 0.73 0.356834
Target:  5'- gGCGcuuGGCGC-GCACCCGGUg--CGGCa -3'
miRNA:   3'- -UGCu--UUGCGuCGUGGGCCAagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 32538 0.71 0.439747
Target:  5'- uGCGAGGCGCAGCAgcgcaucaaCCGcGccCUCGACg -3'
miRNA:   3'- -UGCUUUGCGUCGUg--------GGC-CaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 3996 0.71 0.449622
Target:  5'- cAUGGAcucguCGCGGCGCaCGGUgCUCGACa -3'
miRNA:   3'- -UGCUUu----GCGUCGUGgGCCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 42912 0.71 0.459618
Target:  5'- --aAAGCGCAGCcugcaGCgCCGGUcgCUCGACa -3'
miRNA:   3'- ugcUUUGCGUCG-----UG-GGCCAa-GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 50241 0.71 0.46973
Target:  5'- uACGAGGCGCcguacgucAGCGCCgggCGGUgcacCUCGGCc -3'
miRNA:   3'- -UGCUUUGCG--------UCGUGG---GCCAa---GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 48755 0.7 0.490288
Target:  5'- -gGGAACGuCAcGCACgCGGUgCUCGGCg -3'
miRNA:   3'- ugCUUUGC-GU-CGUGgGCCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 14929 0.7 0.499676
Target:  5'- cGCGGcuaccGGCGCAGCGgcgcaucCCCGGUgguaucggUUCGACg -3'
miRNA:   3'- -UGCU-----UUGCGUCGU-------GGGCCAa-------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 44748 0.7 0.528293
Target:  5'- cCGAAGCGCAGCACgCCGcccgccGUgaagcggcccgacCUCGACa -3'
miRNA:   3'- uGCUUUGCGUCGUG-GGC------CAa------------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 8294 0.7 0.531511
Target:  5'- gGCGAcguguggaucaccGGCGCGGCgcaucacuacgGCCCGGccgacCUCGACg -3'
miRNA:   3'- -UGCU-------------UUGCGUCG-----------UGGGCCaa---GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 45143 0.7 0.532585
Target:  5'- uCGAGGCGCGGCGCUCGGagguggUCgcgUGAg -3'
miRNA:   3'- uGCUUUGCGUCGUGGGCCa-----AGa--GCUg -5'
12823 3' -54.3 NC_003387.1 + 18703 0.7 0.532585
Target:  5'- uGCGGGucGCGCAGCGCCaGGgcg-CGGCa -3'
miRNA:   3'- -UGCUU--UGCGUCGUGGgCCaagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 31207 0.69 0.554226
Target:  5'- uACucAGCGCAGCGgCCGGcUCgugcagCGACa -3'
miRNA:   3'- -UGcuUUGCGUCGUgGGCCaAGa-----GCUG- -5'
12823 3' -54.3 NC_003387.1 + 11320 0.69 0.565145
Target:  5'- aGCGAcucgugcuGCGCcucGGuCGCCCGGcgCUCGGCc -3'
miRNA:   3'- -UGCUu-------UGCG---UC-GUGGGCCaaGAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.