Results 41 - 60 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 45825 | 0.67 | 0.708776 |
Target: 5'- gGCGAuAGCGCacuaGGCAgCCGGUgccaCGACg -3' miRNA: 3'- -UGCU-UUGCG----UCGUgGGCCAaga-GCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 34966 | 0.67 | 0.719598 |
Target: 5'- cGCGAuuuACGCGG-GCCUGGUgcccgUCGGCa -3' miRNA: 3'- -UGCUu--UGCGUCgUGGGCCAag---AGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 8262 | 0.66 | 0.729262 |
Target: 5'- cGCGGGcgugcagcgccucGCGCAGCGCCUcGUgcgCgUCGGCg -3' miRNA: 3'- -UGCUU-------------UGCGUCGUGGGcCAa--G-AGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 20045 | 0.66 | 0.73033 |
Target: 5'- gACGAcguGCGCGGCGa--GGUUCagcUCGGCg -3' miRNA: 3'- -UGCUu--UGCGUCGUgggCCAAG---AGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 48387 | 0.66 | 0.73033 |
Target: 5'- uACGuuGCGCugguGCGCCU---UCUCGGCg -3' miRNA: 3'- -UGCuuUGCGu---CGUGGGccaAGAGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 35016 | 0.66 | 0.73033 |
Target: 5'- aGCuGAACGC-GCACCuguggCGGUUCUgGAUg -3' miRNA: 3'- -UGcUUUGCGuCGUGG-----GCCAAGAgCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 28020 | 0.66 | 0.740963 |
Target: 5'- gACGAG-CGCGGCAagCCGaucCUCGGCg -3' miRNA: 3'- -UGCUUuGCGUCGUg-GGCcaaGAGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 38938 | 0.66 | 0.740963 |
Target: 5'- uGCG-AGCGCAGCGCgaCCGGgUCcauacCGACc -3' miRNA: 3'- -UGCuUUGCGUCGUG--GGCCaAGa----GCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 28458 | 0.66 | 0.740963 |
Target: 5'- gACGAGcugGCgGCGGCcCCCGaGgucaagCUCGACg -3' miRNA: 3'- -UGCUU---UG-CGUCGuGGGC-Caa----GAGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 11957 | 0.66 | 0.740963 |
Target: 5'- uCGAGGCGCA-C-CUCGGUguaUCGACg -3' miRNA: 3'- uGCUUUGCGUcGuGGGCCAag-AGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 37401 | 0.66 | 0.751483 |
Target: 5'- gACGAGccagucgucgccGCGCAGCACaaugucgccggugCCGGUgucgugcaacaucucCUCGGCg -3' miRNA: 3'- -UGCUU------------UGCGUCGUG-------------GGCCAa--------------GAGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 41799 | 0.66 | 0.751483 |
Target: 5'- cGCGAccuGGCGCA-CGCCUGGcagaUCaUCGACg -3' miRNA: 3'- -UGCU---UUGCGUcGUGGGCCa---AG-AGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 52574 | 0.66 | 0.751483 |
Target: 5'- cGCGAGugGUAGCaaaccGCCCGGcgagCGAg -3' miRNA: 3'- -UGCUUugCGUCG-----UGGGCCaagaGCUg -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 23826 | 0.66 | 0.751483 |
Target: 5'- uACGugagGGCGCcGCGCCgGGa-CUCGGCg -3' miRNA: 3'- -UGCu---UUGCGuCGUGGgCCaaGAGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 52716 | 0.66 | 0.751483 |
Target: 5'- cGCGAAcgauCGCGGCGCCCc--UCgCGGCa -3' miRNA: 3'- -UGCUUu---GCGUCGUGGGccaAGaGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 48827 | 0.66 | 0.751483 |
Target: 5'- gGCGGucagggucgGGCaGCGGCG-CCGGUUC-CGGCa -3' miRNA: 3'- -UGCU---------UUG-CGUCGUgGGCCAAGaGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 7828 | 0.66 | 0.757737 |
Target: 5'- uACGGAuAUGC-GCGCCCGGcggcugcgucagCUCGGCc -3' miRNA: 3'- -UGCUU-UGCGuCGUGGGCCaa----------GAGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 17719 | 0.66 | 0.76188 |
Target: 5'- uCGAGGCGguGCGcCCCGGcc--CGGCc -3' miRNA: 3'- uGCUUUGCguCGU-GGGCCaagaGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 12230 | 0.66 | 0.76188 |
Target: 5'- gGCGGu-CGcCAGCGCagCGGcgCUCGGCu -3' miRNA: 3'- -UGCUuuGC-GUCGUGg-GCCaaGAGCUG- -5' |
|||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 37789 | 0.66 | 0.76188 |
Target: 5'- cGCGccuGGGCGCAGCACCCGcGg--UCGcaGCa -3' miRNA: 3'- -UGC---UUUGCGUCGUGGGC-CaagAGC--UG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home