miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12823 3' -54.3 NC_003387.1 + 1116 0.69 0.598199
Target:  5'- cAUGAgcGACGCuagGGCGCaCGGUgugCUCGGCg -3'
miRNA:   3'- -UGCU--UUGCG---UCGUGgGCCAa--GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 1720 0.68 0.631518
Target:  5'- aGCGGGccGgGCGGCGcauCCCGGUgcugaUCGACa -3'
miRNA:   3'- -UGCUU--UgCGUCGU---GGGCCAag---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 2413 0.69 0.575019
Target:  5'- uCGggGCGCAucGCguugacgGCCCagccGUUCUCGACg -3'
miRNA:   3'- uGCuuUGCGU--CG-------UGGGc---CAAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 2466 0.67 0.697879
Target:  5'- cCGAggUGCAcCGCCCGGcgCU-GACg -3'
miRNA:   3'- uGCUuuGCGUcGUGGGCCaaGAgCUG- -5'
12823 3' -54.3 NC_003387.1 + 2729 0.67 0.705514
Target:  5'- gGCGGGcaggccACGCAGCAgCCGGUgaacgugcgcgaggUCacCGACg -3'
miRNA:   3'- -UGCUU------UGCGUCGUgGGCCA--------------AGa-GCUG- -5'
12823 3' -54.3 NC_003387.1 + 3996 0.71 0.449622
Target:  5'- cAUGGAcucguCGCGGCGCaCGGUgCUCGACa -3'
miRNA:   3'- -UGCUUu----GCGUCGUGgGCCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 6584 0.69 0.58714
Target:  5'- cGCGAcGCGaaCGGCaACCCGGUguUCcgCGACg -3'
miRNA:   3'- -UGCUuUGC--GUCG-UGGGCCA--AGa-GCUG- -5'
12823 3' -54.3 NC_003387.1 + 6608 0.66 0.77214
Target:  5'- cCGAGccacCGCAGCAgCCGGaacaUgUCGGCg -3'
miRNA:   3'- uGCUUu---GCGUCGUgGGCCa---AgAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 7828 0.66 0.757737
Target:  5'- uACGGAuAUGC-GCGCCCGGcggcugcgucagCUCGGCc -3'
miRNA:   3'- -UGCUU-UGCGuCGUGGGCCaa----------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 8262 0.66 0.729262
Target:  5'- cGCGGGcgugcagcgccucGCGCAGCGCCUcGUgcgCgUCGGCg -3'
miRNA:   3'- -UGCUU-------------UGCGUCGUGGGcCAa--G-AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 8294 0.7 0.531511
Target:  5'- gGCGAcguguggaucaccGGCGCGGCgcaucacuacgGCCCGGccgacCUCGACg -3'
miRNA:   3'- -UGCU-------------UUGCGUCG-----------UGGGCCaa---GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 9621 0.66 0.76188
Target:  5'- -aGAAGCacuGCAGCgACaaGGcUCUCGACa -3'
miRNA:   3'- ugCUUUG---CGUCG-UGggCCaAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 10426 0.68 0.653749
Target:  5'- uACGGcuCGCGGCugUCGGcgggcaUCGACa -3'
miRNA:   3'- -UGCUuuGCGUCGugGGCCaag---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 10505 0.67 0.708776
Target:  5'- -aGAucAGCGgGGCGCUCGG--CUCGGCg -3'
miRNA:   3'- ugCU--UUGCgUCGUGGGCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 11320 0.69 0.565145
Target:  5'- aGCGAcucgugcuGCGCcucGGuCGCCCGGcgCUCGGCc -3'
miRNA:   3'- -UGCUu-------UGCG---UC-GUGGGCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 11706 0.68 0.620398
Target:  5'- cCGucGACGCAGUcgACCCGGccgUCGACg -3'
miRNA:   3'- uGCu-UUGCGUCG--UGGGCCaagAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 11957 0.66 0.740963
Target:  5'- uCGAGGCGCA-C-CUCGGUguaUCGACg -3'
miRNA:   3'- uGCUUUGCGUcGuGGGCCAag-AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 12230 0.66 0.76188
Target:  5'- gGCGGu-CGcCAGCGCagCGGcgCUCGGCu -3'
miRNA:   3'- -UGCUuuGC-GUCGUGg-GCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 13296 0.78 0.182169
Target:  5'- cCGAGcuUGCGGCGCCCGGUcacCUCGACc -3'
miRNA:   3'- uGCUUu-GCGUCGUGGGCCAa--GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 14672 0.67 0.675899
Target:  5'- cGCGAAcCGCGGCACgUGGgagUCgUGGCc -3'
miRNA:   3'- -UGCUUuGCGUCGUGgGCCa--AGaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.