Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 35016 | 0.66 | 0.73033 |
Target: 5'- aGCuGAACGC-GCACCuguggCGGUUCUgGAUg -3' miRNA: 3'- -UGcUUUGCGuCGUGG-----GCCAAGAgCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 37401 | 0.66 | 0.751483 |
Target: 5'- gACGAGccagucgucgccGCGCAGCACaaugucgccggugCCGGUgucgugcaacaucucCUCGGCg -3' miRNA: 3'- -UGCUU------------UGCGUCGUG-------------GGCCAa--------------GAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 37789 | 0.66 | 0.76188 |
Target: 5'- cGCGccuGGGCGCAGCACCCGcGg--UCGcaGCa -3' miRNA: 3'- -UGC---UUUGCGUCGUGGGC-CaagAGC--UG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 37837 | 0.66 | 0.76188 |
Target: 5'- aGCGAGgucGgGCAccccuGCGCCCGGcggcucgcCUCGACg -3' miRNA: 3'- -UGCUU---UgCGU-----CGUGGGCCaa------GAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 37909 | 0.69 | 0.565145 |
Target: 5'- gGCGAccCGCu--GCCCGGUggCUCGGCa -3' miRNA: 3'- -UGCUuuGCGucgUGGGCCAa-GAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 38938 | 0.66 | 0.740963 |
Target: 5'- uGCG-AGCGCAGCGCgaCCGGgUCcauacCGACc -3' miRNA: 3'- -UGCuUUGCGUCGUG--GGCCaAGa----GCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 41299 | 0.67 | 0.697879 |
Target: 5'- cACGAgcaccGACGaCAGCACCuCGGggC-CGAUc -3' miRNA: 3'- -UGCU-----UUGC-GUCGUGG-GCCaaGaGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 41799 | 0.66 | 0.751483 |
Target: 5'- cGCGAccuGGCGCA-CGCCUGGcagaUCaUCGACg -3' miRNA: 3'- -UGCU---UUGCGUcGUGGGCCa---AG-AGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 42912 | 0.71 | 0.459618 |
Target: 5'- --aAAGCGCAGCcugcaGCgCCGGUcgCUCGACa -3' miRNA: 3'- ugcUUUGCGUCG-----UG-GGCCAa-GAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 43117 | 0.74 | 0.323675 |
Target: 5'- cGCGAcGGCGCGGCGCCgCGGUggUgGGCg -3' miRNA: 3'- -UGCU-UUGCGUCGUGG-GCCAagAgCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 43683 | 0.67 | 0.664839 |
Target: 5'- cGCGAuccuGGCGUggaucgccgacGGCGCCCgccaGGUgCUCGACg -3' miRNA: 3'- -UGCU----UUGCG-----------UCGUGGG----CCAaGAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 44748 | 0.7 | 0.528293 |
Target: 5'- cCGAAGCGCAGCACgCCGcccgccGUgaagcggcccgacCUCGACa -3' miRNA: 3'- uGCUUUGCGUCGUG-GGC------CAa------------GAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 45143 | 0.7 | 0.532585 |
Target: 5'- uCGAGGCGCGGCGCUCGGagguggUCgcgUGAg -3' miRNA: 3'- uGCUUUGCGUCGUGGGCCa-----AGa--GCUg -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 45825 | 0.67 | 0.708776 |
Target: 5'- gGCGAuAGCGCacuaGGCAgCCGGUgccaCGACg -3' miRNA: 3'- -UGCU-UUGCG----UCGUgGGCCAaga-GCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 46169 | 0.68 | 0.653749 |
Target: 5'- cGCGAccucguAACGCAGCGCCaGGga--CGACa -3' miRNA: 3'- -UGCU------UUGCGUCGUGGgCCaagaGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 46994 | 0.77 | 0.208572 |
Target: 5'- gACGAcgAGCGCGGgcCGCCUGGUgCUCGACu -3' miRNA: 3'- -UGCU--UUGCGUC--GUGGGCCAaGAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 48387 | 0.66 | 0.73033 |
Target: 5'- uACGuuGCGCugguGCGCCU---UCUCGGCg -3' miRNA: 3'- -UGCuuUGCGu---CGUGGGccaAGAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 48755 | 0.7 | 0.490288 |
Target: 5'- -gGGAACGuCAcGCACgCGGUgCUCGGCg -3' miRNA: 3'- ugCUUUGC-GU-CGUGgGCCAaGAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 48827 | 0.66 | 0.751483 |
Target: 5'- gGCGGucagggucgGGCaGCGGCG-CCGGUUC-CGGCa -3' miRNA: 3'- -UGCU---------UUG-CGUCGUgGGCCAAGaGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 49197 | 0.67 | 0.708776 |
Target: 5'- cUGggGCgGCGGCgggggcacugGCgCCGGUUCguUCGACa -3' miRNA: 3'- uGCuuUG-CGUCG----------UG-GGCCAAG--AGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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