miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12823 3' -54.3 NC_003387.1 + 37837 0.66 0.76188
Target:  5'- aGCGAGgucGgGCAccccuGCGCCCGGcggcucgcCUCGACg -3'
miRNA:   3'- -UGCUU---UgCGU-----CGUGGGCCaa------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 37789 0.66 0.76188
Target:  5'- cGCGccuGGGCGCAGCACCCGcGg--UCGcaGCa -3'
miRNA:   3'- -UGC---UUUGCGUCGUGGGC-CaagAGC--UG- -5'
12823 3' -54.3 NC_003387.1 + 37401 0.66 0.751483
Target:  5'- gACGAGccagucgucgccGCGCAGCACaaugucgccggugCCGGUgucgugcaacaucucCUCGGCg -3'
miRNA:   3'- -UGCUU------------UGCGUCGUG-------------GGCCAa--------------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 35016 0.66 0.73033
Target:  5'- aGCuGAACGC-GCACCuguggCGGUUCUgGAUg -3'
miRNA:   3'- -UGcUUUGCGuCGUGG-----GCCAAGAgCUG- -5'
12823 3' -54.3 NC_003387.1 + 34966 0.67 0.719598
Target:  5'- cGCGAuuuACGCGG-GCCUGGUgcccgUCGGCa -3'
miRNA:   3'- -UGCUu--UGCGUCgUGGGCCAag---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 33196 0.68 0.631518
Target:  5'- uGCGGAucGCGCAGCGCaagcgcgaGGcccgCUCGGCg -3'
miRNA:   3'- -UGCUU--UGCGUCGUGgg------CCaa--GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 32538 0.71 0.439747
Target:  5'- uGCGAGGCGCAGCAgcgcaucaaCCGcGccCUCGACg -3'
miRNA:   3'- -UGCUUUGCGUCGUg--------GGC-CaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 31207 0.69 0.554226
Target:  5'- uACucAGCGCAGCGgCCGGcUCgugcagCGACa -3'
miRNA:   3'- -UGcuUUGCGUCGUgGGCCaAGa-----GCUG- -5'
12823 3' -54.3 NC_003387.1 + 28458 0.66 0.740963
Target:  5'- gACGAGcugGCgGCGGCcCCCGaGgucaagCUCGACg -3'
miRNA:   3'- -UGCUU---UG-CGUCGuGGGC-Caa----GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 28020 0.66 0.740963
Target:  5'- gACGAG-CGCGGCAagCCGaucCUCGGCg -3'
miRNA:   3'- -UGCUUuGCGUCGUg-GGCcaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 26055 1.1 0.001013
Target:  5'- cACGAAACGCAGCACCCGGUUCUCGACg -3'
miRNA:   3'- -UGCUUUGCGUCGUGGGCCAAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 25558 0.68 0.619287
Target:  5'- cCGAGGgGCAGCagcuucgcgacgcGCUCGGauUUCUCGAUg -3'
miRNA:   3'- uGCUUUgCGUCG-------------UGGGCC--AAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 24797 0.67 0.708776
Target:  5'- uCGggGuCGCGGCcgACCUGGcgcagcagCUCGGCg -3'
miRNA:   3'- uGCuuU-GCGUCG--UGGGCCaa------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 24301 0.73 0.356834
Target:  5'- cAUGAGccgcCGCAGCAgCCGGgucugCUCGGCg -3'
miRNA:   3'- -UGCUUu---GCGUCGUgGGCCaa---GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 23826 0.66 0.751483
Target:  5'- uACGugagGGCGCcGCGCCgGGa-CUCGGCg -3'
miRNA:   3'- -UGCu---UUGCGuCGUGGgCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 23066 0.74 0.307976
Target:  5'- gGCGAGGCGUucgAGCAgCCGGUUaCUCG-Cg -3'
miRNA:   3'- -UGCUUUGCG---UCGUgGGCCAA-GAGCuG- -5'
12823 3' -54.3 NC_003387.1 + 22446 0.69 0.565145
Target:  5'- cGCGGGcCGCGGCguugGCCucgCGGUaCUCGACg -3'
miRNA:   3'- -UGCUUuGCGUCG----UGG---GCCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 21982 0.68 0.631518
Target:  5'- ----uACGguGCGCCCGGUgaUCcCGGCc -3'
miRNA:   3'- ugcuuUGCguCGUGGGCCA--AGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 20045 0.66 0.73033
Target:  5'- gACGAcguGCGCGGCGa--GGUUCagcUCGGCg -3'
miRNA:   3'- -UGCUu--UGCGUCGUgggCCAAG---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 19663 0.73 0.356834
Target:  5'- gGCGcuuGGCGC-GCACCCGGUg--CGGCa -3'
miRNA:   3'- -UGCu--UUGCGuCGUGGGCCAagaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.