Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12823 | 3' | -54.3 | NC_003387.1 | + | 18703 | 0.7 | 0.532585 |
Target: 5'- uGCGGGucGCGCAGCGCCaGGgcg-CGGCa -3' miRNA: 3'- -UGCUU--UGCGUCGUGGgCCaagaGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 17719 | 0.66 | 0.76188 |
Target: 5'- uCGAGGCGguGCGcCCCGGcc--CGGCc -3' miRNA: 3'- uGCUUUGCguCGU-GGGCCaagaGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 16308 | 0.73 | 0.356834 |
Target: 5'- cACGAAAUGCAGCucgGCgCCGGUg-UCGAUg -3' miRNA: 3'- -UGCUUUGCGUCG---UG-GGCCAagAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 14929 | 0.7 | 0.499676 |
Target: 5'- cGCGGcuaccGGCGCAGCGgcgcaucCCCGGUgguaucggUUCGACg -3' miRNA: 3'- -UGCU-----UUGCGUCGU-------GGGCCAa-------GAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 14672 | 0.67 | 0.675899 |
Target: 5'- cGCGAAcCGCGGCACgUGGgagUCgUGGCc -3' miRNA: 3'- -UGCUUuGCGUCGUGgGCCa--AGaGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 13296 | 0.78 | 0.182169 |
Target: 5'- cCGAGcuUGCGGCGCCCGGUcacCUCGACc -3' miRNA: 3'- uGCUUu-GCGUCGUGGGCCAa--GAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 12230 | 0.66 | 0.76188 |
Target: 5'- gGCGGu-CGcCAGCGCagCGGcgCUCGGCu -3' miRNA: 3'- -UGCUuuGC-GUCGUGg-GCCaaGAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 11957 | 0.66 | 0.740963 |
Target: 5'- uCGAGGCGCA-C-CUCGGUguaUCGACg -3' miRNA: 3'- uGCUUUGCGUcGuGGGCCAag-AGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 11706 | 0.68 | 0.620398 |
Target: 5'- cCGucGACGCAGUcgACCCGGccgUCGACg -3' miRNA: 3'- uGCu-UUGCGUCG--UGGGCCaagAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 11320 | 0.69 | 0.565145 |
Target: 5'- aGCGAcucgugcuGCGCcucGGuCGCCCGGcgCUCGGCc -3' miRNA: 3'- -UGCUu-------UGCG---UC-GUGGGCCaaGAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 10505 | 0.67 | 0.708776 |
Target: 5'- -aGAucAGCGgGGCGCUCGG--CUCGGCg -3' miRNA: 3'- ugCU--UUGCgUCGUGGGCCaaGAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 10426 | 0.68 | 0.653749 |
Target: 5'- uACGGcuCGCGGCugUCGGcgggcaUCGACa -3' miRNA: 3'- -UGCUuuGCGUCGugGGCCaag---AGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 9621 | 0.66 | 0.76188 |
Target: 5'- -aGAAGCacuGCAGCgACaaGGcUCUCGACa -3' miRNA: 3'- ugCUUUG---CGUCG-UGggCCaAGAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 8294 | 0.7 | 0.531511 |
Target: 5'- gGCGAcguguggaucaccGGCGCGGCgcaucacuacgGCCCGGccgacCUCGACg -3' miRNA: 3'- -UGCU-------------UUGCGUCG-----------UGGGCCaa---GAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 8262 | 0.66 | 0.729262 |
Target: 5'- cGCGGGcgugcagcgccucGCGCAGCGCCUcGUgcgCgUCGGCg -3' miRNA: 3'- -UGCUU-------------UGCGUCGUGGGcCAa--G-AGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 7828 | 0.66 | 0.757737 |
Target: 5'- uACGGAuAUGC-GCGCCCGGcggcugcgucagCUCGGCc -3' miRNA: 3'- -UGCUU-UGCGuCGUGGGCCaa----------GAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 6608 | 0.66 | 0.77214 |
Target: 5'- cCGAGccacCGCAGCAgCCGGaacaUgUCGGCg -3' miRNA: 3'- uGCUUu---GCGUCGUgGGCCa---AgAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 6584 | 0.69 | 0.58714 |
Target: 5'- cGCGAcGCGaaCGGCaACCCGGUguUCcgCGACg -3' miRNA: 3'- -UGCUuUGC--GUCG-UGGGCCA--AGa-GCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 3996 | 0.71 | 0.449622 |
Target: 5'- cAUGGAcucguCGCGGCGCaCGGUgCUCGACa -3' miRNA: 3'- -UGCUUu----GCGUCGUGgGCCAaGAGCUG- -5' |
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12823 | 3' | -54.3 | NC_003387.1 | + | 2729 | 0.67 | 0.705514 |
Target: 5'- gGCGGGcaggccACGCAGCAgCCGGUgaacgugcgcgaggUCacCGACg -3' miRNA: 3'- -UGCUU------UGCGUCGUgGGCCA--------------AGa-GCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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