miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12823 3' -54.3 NC_003387.1 + 46994 0.77 0.208572
Target:  5'- gACGAcgAGCGCGGgcCGCCUGGUgCUCGACu -3'
miRNA:   3'- -UGCU--UUGCGUC--GUGGGCCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 14672 0.67 0.675899
Target:  5'- cGCGAAcCGCGGCACgUGGgagUCgUGGCc -3'
miRNA:   3'- -UGCUUuGCGUCGUGgGCCa--AGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 2729 0.67 0.705514
Target:  5'- gGCGGGcaggccACGCAGCAgCCGGUgaacgugcgcgaggUCacCGACg -3'
miRNA:   3'- -UGCUU------UGCGUCGUgGGCCA--------------AGa-GCUG- -5'
12823 3' -54.3 NC_003387.1 + 17719 0.66 0.76188
Target:  5'- uCGAGGCGguGCGcCCCGGcc--CGGCc -3'
miRNA:   3'- uGCUUUGCguCGU-GGGCCaagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 42912 0.71 0.459618
Target:  5'- --aAAGCGCAGCcugcaGCgCCGGUcgCUCGACa -3'
miRNA:   3'- ugcUUUGCGUCG-----UG-GGCCAa-GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 48755 0.7 0.490288
Target:  5'- -gGGAACGuCAcGCACgCGGUgCUCGGCg -3'
miRNA:   3'- ugCUUUGC-GU-CGUGgGCCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 44748 0.7 0.528293
Target:  5'- cCGAAGCGCAGCACgCCGcccgccGUgaagcggcccgacCUCGACa -3'
miRNA:   3'- uGCUUUGCGUCGUG-GGC------CAa------------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 8294 0.7 0.531511
Target:  5'- gGCGAcguguggaucaccGGCGCGGCgcaucacuacgGCCCGGccgacCUCGACg -3'
miRNA:   3'- -UGCU-------------UUGCGUCG-----------UGGGCCaa---GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 6584 0.69 0.58714
Target:  5'- cGCGAcGCGaaCGGCaACCCGGUguUCcgCGACg -3'
miRNA:   3'- -UGCUuUGC--GUCG-UGGGCCA--AGa-GCUG- -5'
12823 3' -54.3 NC_003387.1 + 43683 0.67 0.664839
Target:  5'- cGCGAuccuGGCGUggaucgccgacGGCGCCCgccaGGUgCUCGACg -3'
miRNA:   3'- -UGCU----UUGCG-----------UCGUGGG----CCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 1720 0.68 0.631518
Target:  5'- aGCGGGccGgGCGGCGcauCCCGGUgcugaUCGACa -3'
miRNA:   3'- -UGCUU--UgCGUCGU---GGGCCAag---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 37909 0.69 0.565145
Target:  5'- gGCGAccCGCu--GCCCGGUggCUCGGCa -3'
miRNA:   3'- -UGCUuuGCGucgUGGGCCAa-GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 43117 0.74 0.323675
Target:  5'- cGCGAcGGCGCGGCGCCgCGGUggUgGGCg -3'
miRNA:   3'- -UGCU-UUGCGUCGUGG-GCCAagAgCUG- -5'
12823 3' -54.3 NC_003387.1 + 33196 0.68 0.631518
Target:  5'- uGCGGAucGCGCAGCGCaagcgcgaGGcccgCUCGGCg -3'
miRNA:   3'- -UGCUU--UGCGUCGUGgg------CCaa--GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 32538 0.71 0.439747
Target:  5'- uGCGAGGCGCAGCAgcgcaucaaCCGcGccCUCGACg -3'
miRNA:   3'- -UGCUUUGCGUCGUg--------GGC-CaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 45143 0.7 0.532585
Target:  5'- uCGAGGCGCGGCGCUCGGagguggUCgcgUGAg -3'
miRNA:   3'- uGCUUUGCGUCGUGGGCCa-----AGa--GCUg -5'
12823 3' -54.3 NC_003387.1 + 10426 0.68 0.653749
Target:  5'- uACGGcuCGCGGCugUCGGcgggcaUCGACa -3'
miRNA:   3'- -UGCUuuGCGUCGugGGCCaag---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 2466 0.67 0.697879
Target:  5'- cCGAggUGCAcCGCCCGGcgCU-GACg -3'
miRNA:   3'- uGCUuuGCGUcGUGGGCCaaGAgCUG- -5'
12823 3' -54.3 NC_003387.1 + 3996 0.71 0.449622
Target:  5'- cAUGGAcucguCGCGGCGCaCGGUgCUCGACa -3'
miRNA:   3'- -UGCUUu----GCGUCGUGgGCCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 14929 0.7 0.499676
Target:  5'- cGCGGcuaccGGCGCAGCGgcgcaucCCCGGUgguaucggUUCGACg -3'
miRNA:   3'- -UGCU-----UUGCGUCGU-------GGGCCAa-------GAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.