miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12823 3' -54.3 NC_003387.1 + 10505 0.67 0.708776
Target:  5'- -aGAucAGCGgGGCGCUCGG--CUCGGCg -3'
miRNA:   3'- ugCU--UUGCgUCGUGGGCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 52716 0.66 0.751483
Target:  5'- cGCGAAcgauCGCGGCGCCCc--UCgCGGCa -3'
miRNA:   3'- -UGCUUu---GCGUCGUGGGccaAGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 2729 0.67 0.705514
Target:  5'- gGCGGGcaggccACGCAGCAgCCGGUgaacgugcgcgaggUCacCGACg -3'
miRNA:   3'- -UGCUU------UGCGUCGUgGGCCA--------------AGa-GCUG- -5'
12823 3' -54.3 NC_003387.1 + 6584 0.69 0.58714
Target:  5'- cGCGAcGCGaaCGGCaACCCGGUguUCcgCGACg -3'
miRNA:   3'- -UGCUuUGC--GUCG-UGGGCCA--AGa-GCUG- -5'
12823 3' -54.3 NC_003387.1 + 41799 0.66 0.751483
Target:  5'- cGCGAccuGGCGCA-CGCCUGGcagaUCaUCGACg -3'
miRNA:   3'- -UGCU---UUGCGUcGUGGGCCa---AG-AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 28020 0.66 0.740963
Target:  5'- gACGAG-CGCGGCAagCCGaucCUCGGCg -3'
miRNA:   3'- -UGCUUuGCGUCGUg-GGCcaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 9621 0.66 0.76188
Target:  5'- -aGAAGCacuGCAGCgACaaGGcUCUCGACa -3'
miRNA:   3'- ugCUUUG---CGUCG-UGggCCaAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 17719 0.66 0.76188
Target:  5'- uCGAGGCGguGCGcCCCGGcc--CGGCc -3'
miRNA:   3'- uGCUUUGCguCGU-GGGCCaagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 37909 0.69 0.565145
Target:  5'- gGCGAccCGCu--GCCCGGUggCUCGGCa -3'
miRNA:   3'- -UGCUuuGCGucgUGGGCCAa-GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 45143 0.7 0.532585
Target:  5'- uCGAGGCGCGGCGCUCGGagguggUCgcgUGAg -3'
miRNA:   3'- uGCUUUGCGUCGUGGGCCa-----AGa--GCUg -5'
12823 3' -54.3 NC_003387.1 + 1720 0.68 0.631518
Target:  5'- aGCGGGccGgGCGGCGcauCCCGGUgcugaUCGACa -3'
miRNA:   3'- -UGCUU--UgCGUCGU---GGGCCAag---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 21982 0.68 0.631518
Target:  5'- ----uACGguGCGCCCGGUgaUCcCGGCc -3'
miRNA:   3'- ugcuuUGCguCGUGGGCCA--AGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 23826 0.66 0.751483
Target:  5'- uACGugagGGCGCcGCGCCgGGa-CUCGGCg -3'
miRNA:   3'- -UGCu---UUGCGuCGUGGgCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 23066 0.74 0.307976
Target:  5'- gGCGAGGCGUucgAGCAgCCGGUUaCUCG-Cg -3'
miRNA:   3'- -UGCUUUGCG---UCGUgGGCCAA-GAGCuG- -5'
12823 3' -54.3 NC_003387.1 + 19663 0.73 0.356834
Target:  5'- gGCGcuuGGCGC-GCACCCGGUg--CGGCa -3'
miRNA:   3'- -UGCu--UUGCGuCGUGGGCCAagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 24301 0.73 0.356834
Target:  5'- cAUGAGccgcCGCAGCAgCCGGgucugCUCGGCg -3'
miRNA:   3'- -UGCUUu---GCGUCGUgGGCCaa---GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 16308 0.73 0.356834
Target:  5'- cACGAAAUGCAGCucgGCgCCGGUg-UCGAUg -3'
miRNA:   3'- -UGCUUUGCGUCG---UG-GGCCAagAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 50241 0.71 0.46973
Target:  5'- uACGAGGCGCcguacgucAGCGCCgggCGGUgcacCUCGGCc -3'
miRNA:   3'- -UGCUUUGCG--------UCGUGG---GCCAa---GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 24797 0.67 0.708776
Target:  5'- uCGggGuCGCGGCcgACCUGGcgcagcagCUCGGCg -3'
miRNA:   3'- uGCuuU-GCGUCG--UGGGCCaa------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 45825 0.67 0.708776
Target:  5'- gGCGAuAGCGCacuaGGCAgCCGGUgccaCGACg -3'
miRNA:   3'- -UGCU-UUGCG----UCGUgGGCCAaga-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.