miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12823 3' -54.3 NC_003387.1 + 20045 0.66 0.73033
Target:  5'- gACGAcguGCGCGGCGa--GGUUCagcUCGGCg -3'
miRNA:   3'- -UGCUu--UGCGUCGUgggCCAAG---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 48387 0.66 0.73033
Target:  5'- uACGuuGCGCugguGCGCCU---UCUCGGCg -3'
miRNA:   3'- -UGCuuUGCGu---CGUGGGccaAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 11957 0.66 0.740963
Target:  5'- uCGAGGCGCA-C-CUCGGUguaUCGACg -3'
miRNA:   3'- uGCUUUGCGUcGuGGGCCAag-AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 23826 0.66 0.751483
Target:  5'- uACGugagGGCGCcGCGCCgGGa-CUCGGCg -3'
miRNA:   3'- -UGCu---UUGCGuCGUGGgCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 37401 0.66 0.751483
Target:  5'- gACGAGccagucgucgccGCGCAGCACaaugucgccggugCCGGUgucgugcaacaucucCUCGGCg -3'
miRNA:   3'- -UGCUU------------UGCGUCGUG-------------GGCCAa--------------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 48827 0.66 0.751483
Target:  5'- gGCGGucagggucgGGCaGCGGCG-CCGGUUC-CGGCa -3'
miRNA:   3'- -UGCU---------UUG-CGUCGUgGGCCAAGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 46169 0.68 0.653749
Target:  5'- cGCGAccucguAACGCAGCGCCaGGga--CGACa -3'
miRNA:   3'- -UGCU------UUGCGUCGUGGgCCaagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 11706 0.68 0.620398
Target:  5'- cCGucGACGCAGUcgACCCGGccgUCGACg -3'
miRNA:   3'- uGCu-UUGCGUCG--UGGGCCaagAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 25558 0.68 0.619287
Target:  5'- cCGAGGgGCAGCagcuucgcgacgcGCUCGGauUUCUCGAUg -3'
miRNA:   3'- uGCUUUgCGUCG-------------UGGGCC--AAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 13296 0.78 0.182169
Target:  5'- cCGAGcuUGCGGCGCCCGGUcacCUCGACc -3'
miRNA:   3'- uGCUUu-GCGUCGUGGGCCAa--GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 23066 0.74 0.307976
Target:  5'- gGCGAGGCGUucgAGCAgCCGGUUaCUCG-Cg -3'
miRNA:   3'- -UGCUUUGCG---UCGUgGGCCAA-GAGCuG- -5'
12823 3' -54.3 NC_003387.1 + 19663 0.73 0.356834
Target:  5'- gGCGcuuGGCGC-GCACCCGGUg--CGGCa -3'
miRNA:   3'- -UGCu--UUGCGuCGUGGGCCAagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 24301 0.73 0.356834
Target:  5'- cAUGAGccgcCGCAGCAgCCGGgucugCUCGGCg -3'
miRNA:   3'- -UGCUUu---GCGUCGUgGGCCaa---GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 16308 0.73 0.356834
Target:  5'- cACGAAAUGCAGCucgGCgCCGGUg-UCGAUg -3'
miRNA:   3'- -UGCUUUGCGUCG---UG-GGCCAagAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 50241 0.71 0.46973
Target:  5'- uACGAGGCGCcguacgucAGCGCCgggCGGUgcacCUCGGCc -3'
miRNA:   3'- -UGCUUUGCG--------UCGUGG---GCCAa---GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 18703 0.7 0.532585
Target:  5'- uGCGGGucGCGCAGCGCCaGGgcg-CGGCa -3'
miRNA:   3'- -UGCUU--UGCGUCGUGGgCCaagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 11320 0.69 0.565145
Target:  5'- aGCGAcucgugcuGCGCcucGGuCGCCCGGcgCUCGGCc -3'
miRNA:   3'- -UGCUu-------UGCG---UC-GUGGGCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 22446 0.69 0.565145
Target:  5'- cGCGGGcCGCGGCguugGCCucgCGGUaCUCGACg -3'
miRNA:   3'- -UGCUUuGCGUCG----UGG---GCCAaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 2413 0.69 0.575019
Target:  5'- uCGggGCGCAucGCguugacgGCCCagccGUUCUCGACg -3'
miRNA:   3'- uGCuuUGCGU--CG-------UGGGc---CAAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 1116 0.69 0.598199
Target:  5'- cAUGAgcGACGCuagGGCGCaCGGUgugCUCGGCg -3'
miRNA:   3'- -UGCU--UUGCG---UCGUGgGCCAa--GAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.