miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12823 3' -54.3 NC_003387.1 + 2413 0.69 0.575019
Target:  5'- uCGggGCGCAucGCguugacgGCCCagccGUUCUCGACg -3'
miRNA:   3'- uGCuuUGCGU--CG-------UGGGc---CAAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 49197 0.67 0.708776
Target:  5'- cUGggGCgGCGGCgggggcacugGCgCCGGUUCguUCGACa -3'
miRNA:   3'- uGCuuUG-CGUCG----------UG-GGCCAAG--AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 24797 0.67 0.708776
Target:  5'- uCGggGuCGCGGCcgACCUGGcgcagcagCUCGGCg -3'
miRNA:   3'- uGCuuU-GCGUCG--UGGGCCaa------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 45825 0.67 0.708776
Target:  5'- gGCGAuAGCGCacuaGGCAgCCGGUgccaCGACg -3'
miRNA:   3'- -UGCU-UUGCG----UCGUgGGCCAaga-GCUG- -5'
12823 3' -54.3 NC_003387.1 + 41299 0.67 0.697879
Target:  5'- cACGAgcaccGACGaCAGCACCuCGGggC-CGAUc -3'
miRNA:   3'- -UGCU-----UUGC-GUCGUGG-GCCaaGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 46169 0.68 0.653749
Target:  5'- cGCGAccucguAACGCAGCGCCaGGga--CGACa -3'
miRNA:   3'- -UGCU------UUGCGUCGUGGgCCaagaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 11706 0.68 0.620398
Target:  5'- cCGucGACGCAGUcgACCCGGccgUCGACg -3'
miRNA:   3'- uGCu-UUGCGUCG--UGGGCCaagAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 25558 0.68 0.619287
Target:  5'- cCGAGGgGCAGCagcuucgcgacgcGCUCGGauUUCUCGAUg -3'
miRNA:   3'- uGCUUUgCGUCG-------------UGGGCC--AAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 1116 0.69 0.598199
Target:  5'- cAUGAgcGACGCuagGGCGCaCGGUgugCUCGGCg -3'
miRNA:   3'- -UGCU--UUGCG---UCGUGgGCCAa--GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 8262 0.66 0.729262
Target:  5'- cGCGGGcgugcagcgccucGCGCAGCGCCUcGUgcgCgUCGGCg -3'
miRNA:   3'- -UGCUU-------------UGCGUCGUGGGcCAa--G-AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 20045 0.66 0.73033
Target:  5'- gACGAcguGCGCGGCGa--GGUUCagcUCGGCg -3'
miRNA:   3'- -UGCUu--UGCGUCGUgggCCAAG---AGCUG- -5'
12823 3' -54.3 NC_003387.1 + 48387 0.66 0.73033
Target:  5'- uACGuuGCGCugguGCGCCU---UCUCGGCg -3'
miRNA:   3'- -UGCuuUGCGu---CGUGGGccaAGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 6608 0.66 0.77214
Target:  5'- cCGAGccacCGCAGCAgCCGGaacaUgUCGGCg -3'
miRNA:   3'- uGCUUu---GCGUCGUgGGCCa---AgAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 12230 0.66 0.76188
Target:  5'- gGCGGu-CGcCAGCGCagCGGcgCUCGGCu -3'
miRNA:   3'- -UGCUuuGC-GUCGUGg-GCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 7828 0.66 0.757737
Target:  5'- uACGGAuAUGC-GCGCCCGGcggcugcgucagCUCGGCc -3'
miRNA:   3'- -UGCUU-UGCGuCGUGGGCCaa----------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 48827 0.66 0.751483
Target:  5'- gGCGGucagggucgGGCaGCGGCG-CCGGUUC-CGGCa -3'
miRNA:   3'- -UGCU---------UUG-CGUCGUgGGCCAAGaGCUG- -5'
12823 3' -54.3 NC_003387.1 + 37401 0.66 0.751483
Target:  5'- gACGAGccagucgucgccGCGCAGCACaaugucgccggugCCGGUgucgugcaacaucucCUCGGCg -3'
miRNA:   3'- -UGCUU------------UGCGUCGUG-------------GGCCAa--------------GAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 23826 0.66 0.751483
Target:  5'- uACGugagGGCGCcGCGCCgGGa-CUCGGCg -3'
miRNA:   3'- -UGCu---UUGCGuCGUGGgCCaaGAGCUG- -5'
12823 3' -54.3 NC_003387.1 + 38938 0.66 0.740963
Target:  5'- uGCG-AGCGCAGCGCgaCCGGgUCcauacCGACc -3'
miRNA:   3'- -UGCuUUGCGUCGUG--GGCCaAGa----GCUG- -5'
12823 3' -54.3 NC_003387.1 + 11957 0.66 0.740963
Target:  5'- uCGAGGCGCA-C-CUCGGUguaUCGACg -3'
miRNA:   3'- uGCUUUGCGUcGuGGGCCAag-AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.