miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12823 5' -59 NC_003387.1 + 44881 0.66 0.505033
Target:  5'- gGCGUC--GGCGauUCCgCCUGCGcGCCGg -3'
miRNA:   3'- -UGCAGuaCCGU--AGG-GGGCGUaCGGCa -5'
12823 5' -59 NC_003387.1 + 13249 0.66 0.494813
Target:  5'- uGCG-CAUGGCGauuUCCCaCCGCGcccGCuCGUa -3'
miRNA:   3'- -UGCaGUACCGU---AGGG-GGCGUa--CG-GCA- -5'
12823 5' -59 NC_003387.1 + 8991 0.66 0.464743
Target:  5'- cACGcUCGcGGg--CUCCCGCAUGCCGc -3'
miRNA:   3'- -UGC-AGUaCCguaGGGGGCGUACGGCa -5'
12823 5' -59 NC_003387.1 + 45719 0.66 0.464743
Target:  5'- cCGUCAUGGCuagcaCCUCCGUAccggguccaguUGUCGUc -3'
miRNA:   3'- uGCAGUACCGua---GGGGGCGU-----------ACGGCA- -5'
12823 5' -59 NC_003387.1 + 14784 0.66 0.464743
Target:  5'- cUGUCucgaacuUGGCGUgCCCgGCgGUGCCGa -3'
miRNA:   3'- uGCAGu------ACCGUAgGGGgCG-UACGGCa -5'
12823 5' -59 NC_003387.1 + 40232 0.66 0.454932
Target:  5'- gACGac--GGCAgCCCCCGCAUGCa-- -3'
miRNA:   3'- -UGCaguaCCGUaGGGGGCGUACGgca -5'
12823 5' -59 NC_003387.1 + 30846 0.67 0.407641
Target:  5'- cGCGUaCGUGuaGUUgCCCGCG-GCCGUg -3'
miRNA:   3'- -UGCA-GUACcgUAGgGGGCGUaCGGCA- -5'
12823 5' -59 NC_003387.1 + 29773 0.68 0.380785
Target:  5'- gACGaUCAgcuacGGCGUgCaCCGCAUGCCGa -3'
miRNA:   3'- -UGC-AGUa----CCGUAgGgGGCGUACGGCa -5'
12823 5' -59 NC_003387.1 + 22969 0.69 0.322874
Target:  5'- uCGUCAUgccgucGGCGUCCagcucgCCCGCGuagcUGCCGUc -3'
miRNA:   3'- uGCAGUA------CCGUAGG------GGGCGU----ACGGCA- -5'
12823 5' -59 NC_003387.1 + 46345 0.7 0.278674
Target:  5'- cACG-CAaGGCGUCgCCCGCG-GCCGa -3'
miRNA:   3'- -UGCaGUaCCGUAGgGGGCGUaCGGCa -5'
12823 5' -59 NC_003387.1 + 26089 1.06 0.000648
Target:  5'- uACGUCAUGGCAUCCCCCGCAUGCCGUc -3'
miRNA:   3'- -UGCAGUACCGUAGGGGGCGUACGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.