miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12824 3' -50.7 NC_003387.1 + 44300 0.66 0.91122
Target:  5'- uGCUCGAGuuuuUGCCGgcgguuAGCuACGGCGGGc- -3'
miRNA:   3'- -CGGGUUCu---ACGGU------UUG-UGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 7049 0.66 0.910544
Target:  5'- -gCCAGGAcGUCAAGCgggcgcuGCGGCGGGa- -3'
miRNA:   3'- cgGGUUCUaCGGUUUG-------UGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 23844 0.66 0.909184
Target:  5'- cGCCUAAGccGCCGcagucggggccgugGAC-CGGCGAc-- -3'
miRNA:   3'- -CGGGUUCuaCGGU--------------UUGuGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 39304 0.66 0.904329
Target:  5'- aGCCCccg--GCCGAcaACGGCGAGg- -3'
miRNA:   3'- -CGGGuucuaCGGUUugUGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 10044 0.66 0.904329
Target:  5'- cGCgCCGAGGgcgcggugucgGCCGGuauCACGGCGGc-- -3'
miRNA:   3'- -CG-GGUUCUa----------CGGUUu--GUGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 32845 0.66 0.904329
Target:  5'- gGCCCAGcacGGUGUCuuGCAgGGCGc--- -3'
miRNA:   3'- -CGGGUU---CUACGGuuUGUgCCGCuuau -5'
12824 3' -50.7 NC_003387.1 + 47696 0.66 0.903623
Target:  5'- aGCCCAcgAGAUGaCCAaccacauGACAcCGGCGc--- -3'
miRNA:   3'- -CGGGU--UCUAC-GGU-------UUGU-GCCGCuuau -5'
12824 3' -50.7 NC_003387.1 + 7334 0.66 0.89714
Target:  5'- gGCUCGGGcgGCCGGGCGCaGCu---- -3'
miRNA:   3'- -CGGGUUCuaCGGUUUGUGcCGcuuau -5'
12824 3' -50.7 NC_003387.1 + 17336 0.66 0.89714
Target:  5'- gGCCagcguGAacgcaUGCCAGGCgACGGCGAu-- -3'
miRNA:   3'- -CGGguu--CU-----ACGGUUUG-UGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 7148 0.66 0.896405
Target:  5'- gGCCCGgcuccucGGccGUGCCGAcgaGCugGCGGCGGAUc -3'
miRNA:   3'- -CGGGU-------UC--UACGGUU---UG--UGCCGCUUAu -5'
12824 3' -50.7 NC_003387.1 + 18209 0.66 0.889659
Target:  5'- aGCCCGAGGaucgcggcGCCGca-GCGGCGGGc- -3'
miRNA:   3'- -CGGGUUCUa-------CGGUuugUGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 22535 0.66 0.889659
Target:  5'- gGCCCAGGccgagggcugGCUcGACGCGGUGGc-- -3'
miRNA:   3'- -CGGGUUCua--------CGGuUUGUGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 23934 0.66 0.889659
Target:  5'- uGCCCGGcugGCUcgaccgGGGCACGGCGAc-- -3'
miRNA:   3'- -CGGGUUcuaCGG------UUUGUGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 5563 0.66 0.885031
Target:  5'- aGCUCAAGGcugacgccGCCGAGCuggcaaagauccgcgACGGCGAAa- -3'
miRNA:   3'- -CGGGUUCUa-------CGGUUUG---------------UGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 33060 0.66 0.88189
Target:  5'- cGCaCCGGGugcgcGCCAAGCGCcGCGAGc- -3'
miRNA:   3'- -CG-GGUUCua---CGGUUUGUGcCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 19323 0.66 0.88189
Target:  5'- -aCCGAGuacaGCgaCGAGCGCGGCGAGa- -3'
miRNA:   3'- cgGGUUCua--CG--GUUUGUGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 6656 0.66 0.88189
Target:  5'- gGCgCAugGGAcGCC-GACGCGGCGAu-- -3'
miRNA:   3'- -CGgGU--UCUaCGGuUUGUGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 52358 0.67 0.873839
Target:  5'- cGCCgCGAcGA-GCCAGACugucacguuuGCGGCGAGc- -3'
miRNA:   3'- -CGG-GUU-CUaCGGUUUG----------UGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 23682 0.67 0.873839
Target:  5'- gGCUCAAGGcgGCCGGAUACaacGCGAGc- -3'
miRNA:   3'- -CGGGUUCUa-CGGUUUGUGc--CGCUUau -5'
12824 3' -50.7 NC_003387.1 + 34063 0.67 0.873839
Target:  5'- gGCCUAAGc-GCCcagGAGCGCaGGCGGAUu -3'
miRNA:   3'- -CGGGUUCuaCGG---UUUGUG-CCGCUUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.