miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12824 3' -50.7 NC_003387.1 + 25902 1.09 0.002441
Target:  5'- gGCCCAAGAUGCCAAACACGGCGAAUAc -3'
miRNA:   3'- -CGGGUUCUACGGUUUGUGCCGCUUAU- -5'
12824 3' -50.7 NC_003387.1 + 42446 0.78 0.277837
Target:  5'- cGCCCGAGGUGUCGAACuucGgGGCGAc-- -3'
miRNA:   3'- -CGGGUUCUACGGUUUG---UgCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 46938 0.78 0.285286
Target:  5'- gGCaCCGAGGUGUCGAucCGCGGCGAGc- -3'
miRNA:   3'- -CG-GGUUCUACGGUUu-GUGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 6311 0.77 0.324893
Target:  5'- -aCCGAGGUcGCCGAGCugGGCGGc-- -3'
miRNA:   3'- cgGGUUCUA-CGGUUUGugCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 17408 0.74 0.456332
Target:  5'- cGCCCAccacugccacAGGUGCCGAuucaguGCGGCGAAc- -3'
miRNA:   3'- -CGGGU----------UCUACGGUUug----UGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 49290 0.74 0.456332
Target:  5'- cGCCCAGGugcucGCCGAGCACGcCGAGg- -3'
miRNA:   3'- -CGGGUUCua---CGGUUUGUGCcGCUUau -5'
12824 3' -50.7 NC_003387.1 + 39124 0.74 0.466784
Target:  5'- aGCgCGGGGcUGCCAGACuGCGGCGAc-- -3'
miRNA:   3'- -CGgGUUCU-ACGGUUUG-UGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 30439 0.73 0.498852
Target:  5'- aGgCCGAGGcggugGCCGAGCACGGCGc--- -3'
miRNA:   3'- -CgGGUUCUa----CGGUUUGUGCCGCuuau -5'
12824 3' -50.7 NC_003387.1 + 20023 0.72 0.554304
Target:  5'- aGCCCugugucauguGGGUGUCGAcgacguGCGCGGCGAGg- -3'
miRNA:   3'- -CGGGu---------UCUACGGUU------UGUGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 31037 0.72 0.565631
Target:  5'- cGCCgAGGcgGCCAgGGCGuCGGCGAAc- -3'
miRNA:   3'- -CGGgUUCuaCGGU-UUGU-GCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 15543 0.72 0.577016
Target:  5'- cGCUCGGGGUGCCGGGCcgccagcuCGGUGAc-- -3'
miRNA:   3'- -CGGGUUCUACGGUUUGu-------GCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 26469 0.72 0.588451
Target:  5'- cGCCCAuGcUGaCCAucAGCACGGCGAu-- -3'
miRNA:   3'- -CGGGUuCuAC-GGU--UUGUGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 15364 0.72 0.599927
Target:  5'- cGCCCGacAGGUGCCGcagauagcgcAGCccGCGGCGGGg- -3'
miRNA:   3'- -CGGGU--UCUACGGU----------UUG--UGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 31658 0.71 0.611432
Target:  5'- uGCCCAAGA-GCaCGAuauACGCGGCGu--- -3'
miRNA:   3'- -CGGGUUCUaCG-GUU---UGUGCCGCuuau -5'
12824 3' -50.7 NC_003387.1 + 8886 0.71 0.644872
Target:  5'- cGCCCGAGGUgaacgccGCCAuuuuCGGCGAGg- -3'
miRNA:   3'- -CGGGUUCUA-------CGGUuuguGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 48187 0.71 0.657543
Target:  5'- gGCCCGcaAGGUGCCc-GCAcCGGCGGc-- -3'
miRNA:   3'- -CGGGU--UCUACGGuuUGU-GCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 611 0.7 0.680489
Target:  5'- cGCUCAg---GCCGAGCAgGGCGAGg- -3'
miRNA:   3'- -CGGGUucuaCGGUUUGUgCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 7793 0.7 0.680489
Target:  5'- uGCCCGAGGUgcagGCCGAGCugcaacgccugGCGGcCGAGg- -3'
miRNA:   3'- -CGGGUUCUA----CGGUUUG-----------UGCC-GCUUau -5'
12824 3' -50.7 NC_003387.1 + 14801 0.7 0.680489
Target:  5'- uGCCCGGcGGUGCCGAgccACGCGggcaGCGggUc -3'
miRNA:   3'- -CGGGUU-CUACGGUU---UGUGC----CGCuuAu -5'
12824 3' -50.7 NC_003387.1 + 26906 0.7 0.691893
Target:  5'- cGCCCAGGccGCCGAGCA-GGCc---- -3'
miRNA:   3'- -CGGGUUCuaCGGUUUGUgCCGcuuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.