miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12824 3' -50.7 NC_003387.1 + 30195 0.67 0.865513
Target:  5'- aGCCCucGGccuggGCCAGgguCGCGGCGGGc- -3'
miRNA:   3'- -CGGGuuCUa----CGGUUu--GUGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 19933 0.67 0.865513
Target:  5'- uGCgCCAGGucgacccgGCgGuACGCGGCGggUGg -3'
miRNA:   3'- -CG-GGUUCua------CGgUuUGUGCCGCuuAU- -5'
12824 3' -50.7 NC_003387.1 + 46093 0.67 0.862963
Target:  5'- aGCCCAAGAcgGCCGccGACauguuccggcugcuGCGGUGGc-- -3'
miRNA:   3'- -CGGGUUCUa-CGGU--UUG--------------UGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 15608 0.67 0.860389
Target:  5'- gGCCCGGccGAcGUCGAgcacgucgagggcgcGCACGGCGAGg- -3'
miRNA:   3'- -CGGGUU--CUaCGGUU---------------UGUGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 33521 0.67 0.85692
Target:  5'- cGCCagCAAGGUGCCGcACAuuCGGCGc--- -3'
miRNA:   3'- -CGG--GUUCUACGGUuUGU--GCCGCuuau -5'
12824 3' -50.7 NC_003387.1 + 46357 0.67 0.848069
Target:  5'- cGCCCGcGGccgagGCCAagcgcGACACGGUGGGc- -3'
miRNA:   3'- -CGGGUuCUa----CGGU-----UUGUGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 7595 0.67 0.83897
Target:  5'- cCCCGAGAgUGaCUGGacGCACGGCGAc-- -3'
miRNA:   3'- cGGGUUCU-AC-GGUU--UGUGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 3989 0.67 0.838046
Target:  5'- uCCCAGGAUugaggcgGCC-GugGCGGCGAu-- -3'
miRNA:   3'- cGGGUUCUA-------CGGuUugUGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 43710 0.68 0.829631
Target:  5'- cGCCCGccAGGUGCUcGACGgCGGCa---- -3'
miRNA:   3'- -CGGGU--UCUACGGuUUGU-GCCGcuuau -5'
12824 3' -50.7 NC_003387.1 + 45987 0.68 0.829631
Target:  5'- gGCCUgu-AUGUCGAGCGgGGCGAGUc -3'
miRNA:   3'- -CGGGuucUACGGUUUGUgCCGCUUAu -5'
12824 3' -50.7 NC_003387.1 + 21146 0.68 0.820065
Target:  5'- gGUUCAGGcgGUCAAGCAgcggcuCGGCGAGg- -3'
miRNA:   3'- -CGGGUUCuaCGGUUUGU------GCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 2275 0.68 0.810281
Target:  5'- cCCCGAGGUGCCcgaGGGCGCcaGCGAcgAa -3'
miRNA:   3'- cGGGUUCUACGG---UUUGUGc-CGCUuaU- -5'
12824 3' -50.7 NC_003387.1 + 13713 0.68 0.800292
Target:  5'- gGCCCAGGcgGC---GCAgGGCGAu-- -3'
miRNA:   3'- -CGGGUUCuaCGguuUGUgCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 30106 0.68 0.79011
Target:  5'- cGgCCAGGGccGCCAAGugaccUugGGCGAGUAg -3'
miRNA:   3'- -CgGGUUCUa-CGGUUU-----GugCCGCUUAU- -5'
12824 3' -50.7 NC_003387.1 + 38495 0.68 0.79011
Target:  5'- uCCCGAGcgGCCGuGgGCGuGCGAGg- -3'
miRNA:   3'- cGGGUUCuaCGGUuUgUGC-CGCUUau -5'
12824 3' -50.7 NC_003387.1 + 47424 0.69 0.783913
Target:  5'- aGCCCGAGGaggGCCucauGCacaacacccacguuuACGGCGAGUc -3'
miRNA:   3'- -CGGGUUCUa--CGGuu--UG---------------UGCCGCUUAu -5'
12824 3' -50.7 NC_003387.1 + 43949 0.69 0.779747
Target:  5'- cGCCCGcc--GCC--GCACGGCGAAg- -3'
miRNA:   3'- -CGGGUucuaCGGuuUGUGCCGCUUau -5'
12824 3' -50.7 NC_003387.1 + 41577 0.69 0.779747
Target:  5'- uGCCCAuAGgcGCCuugauCGCGGCGGu-- -3'
miRNA:   3'- -CGGGU-UCuaCGGuuu--GUGCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 41191 0.69 0.779747
Target:  5'- gGCCU--GGUGCgCGAACAgGGCGAc-- -3'
miRNA:   3'- -CGGGuuCUACG-GUUUGUgCCGCUuau -5'
12824 3' -50.7 NC_003387.1 + 4698 0.69 0.779747
Target:  5'- uGCCCGcacGUGCCGAucCACGGCGc--- -3'
miRNA:   3'- -CGGGUuc-UACGGUUu-GUGCCGCuuau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.