miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12824 5' -57.4 NC_003387.1 + 4146 0.66 0.571815
Target:  5'- aCACGaucaCUGCGUGuGCcugGCGGUGCCa-- -3'
miRNA:   3'- -GUGUg---GGUGUAC-CGa--CGCCACGGaag -5'
12824 5' -57.4 NC_003387.1 + 46346 0.66 0.560932
Target:  5'- --aACCCACGaggcgGGCuUGuCGGUGCCg-- -3'
miRNA:   3'- gugUGGGUGUa----CCG-AC-GCCACGGaag -5'
12824 5' -57.4 NC_003387.1 + 12190 0.66 0.550106
Target:  5'- uCACGCCCucggGCAggucGCUGCucGGUGCCg-- -3'
miRNA:   3'- -GUGUGGG----UGUac--CGACG--CCACGGaag -5'
12824 5' -57.4 NC_003387.1 + 26792 0.66 0.528657
Target:  5'- cCGCAgCCAUGUGGgUGUGGggcGCCg-- -3'
miRNA:   3'- -GUGUgGGUGUACCgACGCCa--CGGaag -5'
12824 5' -57.4 NC_003387.1 + 13029 0.66 0.518048
Target:  5'- cCGCugCUGCAcGcGCUGCGucGCCUUCg -3'
miRNA:   3'- -GUGugGGUGUaC-CGACGCcaCGGAAG- -5'
12824 5' -57.4 NC_003387.1 + 406 0.66 0.518048
Target:  5'- uCGCACCCcCGaGGCUgugcugGCGGUGgCUUa -3'
miRNA:   3'- -GUGUGGGuGUaCCGA------CGCCACgGAAg -5'
12824 5' -57.4 NC_003387.1 + 31331 0.67 0.476529
Target:  5'- gCACugCgGCAaGGCUcuugGCGGUGUCgUCg -3'
miRNA:   3'- -GUGugGgUGUaCCGA----CGCCACGGaAG- -5'
12824 5' -57.4 NC_003387.1 + 39235 0.67 0.466406
Target:  5'- --aACCCGCcggGGCUGUcgguGGUGCCcUCc -3'
miRNA:   3'- gugUGGGUGua-CCGACG----CCACGGaAG- -5'
12824 5' -57.4 NC_003387.1 + 15957 0.67 0.456395
Target:  5'- uCGCGCCUGCAUGuGCuUGCGGUGg---- -3'
miRNA:   3'- -GUGUGGGUGUAC-CG-ACGCCACggaag -5'
12824 5' -57.4 NC_003387.1 + 1147 0.68 0.427078
Target:  5'- gGCGCCUGCGUGcauGC-GCGGUGCUUa- -3'
miRNA:   3'- gUGUGGGUGUAC---CGaCGCCACGGAag -5'
12824 5' -57.4 NC_003387.1 + 14449 0.68 0.417557
Target:  5'- uCACGCgCACGcauggguuccguUGGCUGCGuGUGCUg-- -3'
miRNA:   3'- -GUGUGgGUGU------------ACCGACGC-CACGGaag -5'
12824 5' -57.4 NC_003387.1 + 32702 0.68 0.413784
Target:  5'- gACACCCACAUgacacagGGCUucacggcgcacggcGCGGUGgCCUc- -3'
miRNA:   3'- gUGUGGGUGUA-------CCGA--------------CGCCAC-GGAag -5'
12824 5' -57.4 NC_003387.1 + 38555 0.7 0.346269
Target:  5'- uCACGCCCGCGgcccGGCccgGCgaGGUGCCa-- -3'
miRNA:   3'- -GUGUGGGUGUa---CCGa--CG--CCACGGaag -5'
12824 5' -57.4 NC_003387.1 + 503 0.7 0.346269
Target:  5'- gCGCGCCCGCGUGGCgaccGCGGUu----- -3'
miRNA:   3'- -GUGUGGGUGUACCGa---CGCCAcggaag -5'
12824 5' -57.4 NC_003387.1 + 47631 0.7 0.329864
Target:  5'- -uCGCCCACAUGGCccgcgacuaGCGG-GCCUc- -3'
miRNA:   3'- guGUGGGUGUACCGa--------CGCCaCGGAag -5'
12824 5' -57.4 NC_003387.1 + 34502 0.7 0.329864
Target:  5'- gUACGCCCGCc--GCUGCGGcGCCg-- -3'
miRNA:   3'- -GUGUGGGUGuacCGACGCCaCGGaag -5'
12824 5' -57.4 NC_003387.1 + 21608 0.7 0.306346
Target:  5'- gGCGCCCACcUGGCgcucgGgGGUGCg-UCg -3'
miRNA:   3'- gUGUGGGUGuACCGa----CgCCACGgaAG- -5'
12824 5' -57.4 NC_003387.1 + 7359 0.72 0.252576
Target:  5'- cCGCACCgGCAUGGUUGCGGUcgaaaugggcagcgaGCgUUa -3'
miRNA:   3'- -GUGUGGgUGUACCGACGCCA---------------CGgAAg -5'
12824 5' -57.4 NC_003387.1 + 12715 0.75 0.15854
Target:  5'- aGCGCCCGCggGGCUcuaGGUGCCgUCg -3'
miRNA:   3'- gUGUGGGUGuaCCGAcg-CCACGGaAG- -5'
12824 5' -57.4 NC_003387.1 + 20264 0.76 0.123419
Target:  5'- aACGCCCGCAUGGCgcuaggcacUGCGG-GCCg-- -3'
miRNA:   3'- gUGUGGGUGUACCG---------ACGCCaCGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.