miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12825 3' -57.3 NC_003387.1 + 16543 0.66 0.602825
Target:  5'- cGCGuACAGGuGGCAGauCGGgGCGGUGa -3'
miRNA:   3'- cCGCuUGUCC-UUGUC--GUCgCGCCGCa -5'
12825 3' -57.3 NC_003387.1 + 15355 0.66 0.602825
Target:  5'- gGGCGccgccgcccGACAGGuGCcGCAGauagcgcagccCGCGGCGg -3'
miRNA:   3'- -CCGC---------UUGUCCuUGuCGUC-----------GCGCCGCa -5'
12825 3' -57.3 NC_003387.1 + 12886 0.66 0.602825
Target:  5'- uGGCGucAACGuGAGCGGCcuCGaCGGCGUg -3'
miRNA:   3'- -CCGC--UUGUcCUUGUCGucGC-GCCGCA- -5'
12825 3' -57.3 NC_003387.1 + 42733 0.66 0.591946
Target:  5'- cGgGAACGGGu-CGGguGCgcccuGCGGCGg -3'
miRNA:   3'- cCgCUUGUCCuuGUCguCG-----CGCCGCa -5'
12825 3' -57.3 NC_003387.1 + 21809 0.66 0.591946
Target:  5'- cGGUGcagcccGACGGGAGCugggAGCgcaAGCGCaGCGUg -3'
miRNA:   3'- -CCGC------UUGUCCUUG----UCG---UCGCGcCGCA- -5'
12825 3' -57.3 NC_003387.1 + 29413 0.66 0.59086
Target:  5'- gGGCGcAGgAGGAggccgccGCAGCGGCcCGcGCGg -3'
miRNA:   3'- -CCGC-UUgUCCU-------UGUCGUCGcGC-CGCa -5'
12825 3' -57.3 NC_003387.1 + 38058 0.66 0.581101
Target:  5'- gGGCGGugGcuGAGCgAGCGccgcgucacuguGCGCGGCGg -3'
miRNA:   3'- -CCGCUugUc-CUUG-UCGU------------CGCGCCGCa -5'
12825 3' -57.3 NC_003387.1 + 45616 0.66 0.581101
Target:  5'- cGGCu-GCAGGAGuCGGCguacGGCGaGGCGa -3'
miRNA:   3'- -CCGcuUGUCCUU-GUCG----UCGCgCCGCa -5'
12825 3' -57.3 NC_003387.1 + 27931 0.66 0.570298
Target:  5'- gGGCGccuCGGGGGgGGCucggucggGGCGCucGGCGUg -3'
miRNA:   3'- -CCGCuu-GUCCUUgUCG--------UCGCG--CCGCA- -5'
12825 3' -57.3 NC_003387.1 + 48226 0.66 0.570298
Target:  5'- cGGuCGAGCGGGGccuccGCGGgcuCGGCcuucGCGGCGg -3'
miRNA:   3'- -CC-GCUUGUCCU-----UGUC---GUCG----CGCCGCa -5'
12825 3' -57.3 NC_003387.1 + 45177 0.66 0.559544
Target:  5'- cGCGAucggcCAGGGcgGCAGCAGUGCcGCu- -3'
miRNA:   3'- cCGCUu----GUCCU--UGUCGUCGCGcCGca -5'
12825 3' -57.3 NC_003387.1 + 39217 0.66 0.559544
Target:  5'- cGGuCGGGCaguGGGAGCGGguacCGGCGCcgGGCGa -3'
miRNA:   3'- -CC-GCUUG---UCCUUGUC----GUCGCG--CCGCa -5'
12825 3' -57.3 NC_003387.1 + 41074 0.66 0.559544
Target:  5'- aGCGGuCAGcgcgacguuGAAUAGCcacuGCGCGGCGg -3'
miRNA:   3'- cCGCUuGUC---------CUUGUCGu---CGCGCCGCa -5'
12825 3' -57.3 NC_003387.1 + 48580 0.66 0.559544
Target:  5'- aGGCacacGCAGugaucguguGAAC-GCAGCGCGGUGUc -3'
miRNA:   3'- -CCGcu--UGUC---------CUUGuCGUCGCGCCGCA- -5'
12825 3' -57.3 NC_003387.1 + 18700 0.66 0.559544
Target:  5'- aGGU--GCGGGucgcGCAGCgccagGGCGCGGCa- -3'
miRNA:   3'- -CCGcuUGUCCu---UGUCG-----UCGCGCCGca -5'
12825 3' -57.3 NC_003387.1 + 15103 0.66 0.5574
Target:  5'- cGGCGAuuaccu-CGGCAGUGCGGUGc -3'
miRNA:   3'- -CCGCUuguccuuGUCGUCGCGCCGCa -5'
12825 3' -57.3 NC_003387.1 + 33755 0.67 0.548848
Target:  5'- cGGCaa--GGGcAACGGCGGCGCcGCGa -3'
miRNA:   3'- -CCGcuugUCC-UUGUCGUCGCGcCGCa -5'
12825 3' -57.3 NC_003387.1 + 2629 0.67 0.548848
Target:  5'- cGCGcaaaAGGAugcgaagccGCAcCGGCGCGGCGUg -3'
miRNA:   3'- cCGCuug-UCCU---------UGUcGUCGCGCCGCA- -5'
12825 3' -57.3 NC_003387.1 + 43101 0.67 0.548848
Target:  5'- gGGCGc-CGGGuACgAGCgcgacGGCGCGGCGc -3'
miRNA:   3'- -CCGCuuGUCCuUG-UCG-----UCGCGCCGCa -5'
12825 3' -57.3 NC_003387.1 + 36566 0.67 0.547782
Target:  5'- uGGCGAACAugcuggcGGGcaacacauucgGCGGCAGUaaccCGGCGUu -3'
miRNA:   3'- -CCGCUUGU-------CCU-----------UGUCGUCGc---GCCGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.