miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12825 5' -57.8 NC_003387.1 + 17156 0.66 0.574151
Target:  5'- cGGCGGCC-CGCGCugagcuGGUGCgccgCcuGGGCg -3'
miRNA:   3'- aCUGCCGGuGCGCG------CUACGa---G--UCUGa -5'
12825 5' -57.8 NC_003387.1 + 46807 0.66 0.563394
Target:  5'- cGACGGcCCGCGCuGCGuuaGCUC--GCUg -3'
miRNA:   3'- aCUGCC-GGUGCG-CGCua-CGAGucUGA- -5'
12825 5' -57.8 NC_003387.1 + 8353 0.66 0.560177
Target:  5'- cGACGuGCCGCuguucggcaugcagGcCGCGGUGUUCuGGACg -3'
miRNA:   3'- aCUGC-CGGUG--------------C-GCGCUACGAG-UCUGa -5'
12825 5' -57.8 NC_003387.1 + 1511 0.66 0.552691
Target:  5'- -cGCGGCCgACGUGCag-GCUCAGcACc -3'
miRNA:   3'- acUGCCGG-UGCGCGcuaCGAGUC-UGa -5'
12825 5' -57.8 NC_003387.1 + 34218 0.66 0.552691
Target:  5'- cGGCGGCC-CGagaGC-AUGCUgCAGGCc -3'
miRNA:   3'- aCUGCCGGuGCg--CGcUACGA-GUCUGa -5'
12825 5' -57.8 NC_003387.1 + 10244 0.66 0.552691
Target:  5'- cGAUGaGCCGCGC-CGA-GCgCGGGCUc -3'
miRNA:   3'- aCUGC-CGGUGCGcGCUaCGaGUCUGA- -5'
12825 5' -57.8 NC_003387.1 + 1146 0.66 0.552691
Target:  5'- cGGCGccuGCgugCAUGCGCGGUGCUUAGcgGCa -3'
miRNA:   3'- aCUGC---CG---GUGCGCGCUACGAGUC--UGa -5'
12825 5' -57.8 NC_003387.1 + 3389 0.66 0.54205
Target:  5'- cGACGcucaGCUuGCGCGCGAucaUGCUCGGGg- -3'
miRNA:   3'- aCUGC----CGG-UGCGCGCU---ACGAGUCUga -5'
12825 5' -57.8 NC_003387.1 + 45953 0.66 0.54205
Target:  5'- cGACGGCC-CGCGCaaggGCg-AGGCg -3'
miRNA:   3'- aCUGCCGGuGCGCGcua-CGagUCUGa -5'
12825 5' -57.8 NC_003387.1 + 36625 0.66 0.531478
Target:  5'- cUGcUGGCCGC-CGCGAUGC-CcGACg -3'
miRNA:   3'- -ACuGCCGGUGcGCGCUACGaGuCUGa -5'
12825 5' -57.8 NC_003387.1 + 37126 0.66 0.531478
Target:  5'- cGuCGGCCGgGcCGUGAUGgUUGGGCa -3'
miRNA:   3'- aCuGCCGGUgC-GCGCUACgAGUCUGa -5'
12825 5' -57.8 NC_003387.1 + 3545 0.66 0.531478
Target:  5'- cGACGGCCGCcgccuGCGCGAccgccUGCgcgCuGGugUg -3'
miRNA:   3'- aCUGCCGGUG-----CGCGCU-----ACGa--G-UCugA- -5'
12825 5' -57.8 NC_003387.1 + 39554 0.66 0.528321
Target:  5'- cGGCcaGGUCGCGCucggccuucugcacGCGGUGCUCGG-Cg -3'
miRNA:   3'- aCUG--CCGGUGCG--------------CGCUACGAGUCuGa -5'
12825 5' -57.8 NC_003387.1 + 5324 0.66 0.520982
Target:  5'- gGACGGCCaACGCcuaaucggccgGUGAUGCU--GACg -3'
miRNA:   3'- aCUGCCGG-UGCG-----------CGCUACGAguCUGa -5'
12825 5' -57.8 NC_003387.1 + 47954 0.66 0.520982
Target:  5'- gUGugGGCCGCGaagcacCGCGA-GCU-GGGCg -3'
miRNA:   3'- -ACugCCGGUGC------GCGCUaCGAgUCUGa -5'
12825 5' -57.8 NC_003387.1 + 44789 0.66 0.520982
Target:  5'- cGACaagcuGGCC-CGCGCGAUcCUCgacGGGCUg -3'
miRNA:   3'- aCUG-----CCGGuGCGCGCUAcGAG---UCUGA- -5'
12825 5' -57.8 NC_003387.1 + 41148 0.66 0.520982
Target:  5'- cGACGGCCGC-UGCGAgUGUcaGGGCg -3'
miRNA:   3'- aCUGCCGGUGcGCGCU-ACGagUCUGa -5'
12825 5' -57.8 NC_003387.1 + 37053 0.67 0.510568
Target:  5'- cUGACGGCCugGCgaGCGGgcauucGUUCGccGACa -3'
miRNA:   3'- -ACUGCCGGugCG--CGCUa-----CGAGU--CUGa -5'
12825 5' -57.8 NC_003387.1 + 12229 0.67 0.510568
Target:  5'- cGGCGGUCgccaGCGCaGCGgcGCUCGG-CUu -3'
miRNA:   3'- aCUGCCGG----UGCG-CGCuaCGAGUCuGA- -5'
12825 5' -57.8 NC_003387.1 + 3297 0.67 0.510568
Target:  5'- -cACGGCCGCcgacucggGCGCcgaGGUGCUguGGCg -3'
miRNA:   3'- acUGCCGGUG--------CGCG---CUACGAguCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.