miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12825 5' -57.8 NC_003387.1 + 46099 0.75 0.151352
Target:  5'- aGACGGCCGCcgacauguuccggcuGCuGCGGUgGCUCGGGCg -3'
miRNA:   3'- aCUGCCGGUG---------------CG-CGCUA-CGAGUCUGa -5'
12825 5' -57.8 NC_003387.1 + 45338 0.67 0.500241
Target:  5'- -cGCGGCCGaucCGUGCa--GCUCAGGCg -3'
miRNA:   3'- acUGCCGGU---GCGCGcuaCGAGUCUGa -5'
12825 5' -57.8 NC_003387.1 + 37053 0.67 0.510568
Target:  5'- cUGACGGCCugGCgaGCGGgcauucGUUCGccGACa -3'
miRNA:   3'- -ACUGCCGGugCG--CGCUa-----CGAGU--CUGa -5'
12825 5' -57.8 NC_003387.1 + 17156 0.66 0.574151
Target:  5'- cGGCGGCC-CGCGCugagcuGGUGCgccgCcuGGGCg -3'
miRNA:   3'- aCUGCCGGuGCGCG------CUACGa---G--UCUGa -5'
12825 5' -57.8 NC_003387.1 + 25828 0.7 0.334159
Target:  5'- cGGCGGCCugG-GCGGuggccUGCUCGGugGCg -3'
miRNA:   3'- aCUGCCGGugCgCGCU-----ACGAGUC--UGa -5'
12825 5' -57.8 NC_003387.1 + 48160 0.7 0.350504
Target:  5'- cGA-GGCC-CGCGCGGUcGCgCAGGCg -3'
miRNA:   3'- aCUgCCGGuGCGCGCUA-CGaGUCUGa -5'
12825 5' -57.8 NC_003387.1 + 470 0.69 0.402865
Target:  5'- cGACGGCgACcgGCGCGAgcUGCUCGucgcGAUg -3'
miRNA:   3'- aCUGCCGgUG--CGCGCU--ACGAGU----CUGa -5'
12825 5' -57.8 NC_003387.1 + 44938 0.68 0.430838
Target:  5'- cGACGaGgCGCuCGCGAagGCUCAGGCc -3'
miRNA:   3'- aCUGC-CgGUGcGCGCUa-CGAGUCUGa -5'
12825 5' -57.8 NC_003387.1 + 26564 0.68 0.440413
Target:  5'- aUGACGcCCuuGCGgGCGGUGC-CGGGCa -3'
miRNA:   3'- -ACUGCcGG--UGCgCGCUACGaGUCUGa -5'
12825 5' -57.8 NC_003387.1 + 49235 0.67 0.500241
Target:  5'- aGGCGGCCGa--GCGGcUGCUC-GACg -3'
miRNA:   3'- aCUGCCGGUgcgCGCU-ACGAGuCUGa -5'
12825 5' -57.8 NC_003387.1 + 48249 0.67 0.479873
Target:  5'- cGGuCGGCCGCG-GCcagcaGCUCGGGCUg -3'
miRNA:   3'- aCU-GCCGGUGCgCGcua--CGAGUCUGA- -5'
12825 5' -57.8 NC_003387.1 + 12463 0.68 0.440413
Target:  5'- cGGCGGCCugGcCGCGGgccugGCguccgagCAGAa- -3'
miRNA:   3'- aCUGCCGGugC-GCGCUa----CGa------GUCUga -5'
12825 5' -57.8 NC_003387.1 + 30164 0.73 0.206657
Target:  5'- cGACcaGGCC-CGCGCGAUcGCcUCGGGCa -3'
miRNA:   3'- aCUG--CCGGuGCGCGCUA-CG-AGUCUGa -5'
12825 5' -57.8 NC_003387.1 + 51225 0.67 0.479873
Target:  5'- cGuCGGCCGCG-GCcuGGUGCUC-GACg -3'
miRNA:   3'- aCuGCCGGUGCgCG--CUACGAGuCUGa -5'
12825 5' -57.8 NC_003387.1 + 41986 0.72 0.260903
Target:  5'- gGA-GGCCGC-CGCGGUGCUCAaGCg -3'
miRNA:   3'- aCUgCCGGUGcGCGCUACGAGUcUGa -5'
12825 5' -57.8 NC_003387.1 + 45872 0.68 0.440413
Target:  5'- -uGCGGCUGCGCGCcGcgGCcgagCGGGCg -3'
miRNA:   3'- acUGCCGGUGCGCG-CuaCGa---GUCUGa -5'
12825 5' -57.8 NC_003387.1 + 43290 0.67 0.490007
Target:  5'- gGACGuGCUcaGCGCGGUGCU-GGGCg -3'
miRNA:   3'- aCUGC-CGGugCGCGCUACGAgUCUGa -5'
12825 5' -57.8 NC_003387.1 + 37181 0.67 0.508495
Target:  5'- cUGGCGGCCcggcaccccgaGCGCG-UGCagCAGGCg -3'
miRNA:   3'- -ACUGCCGGug---------CGCGCuACGa-GUCUGa -5'
12825 5' -57.8 NC_003387.1 + 731 0.71 0.267598
Target:  5'- cGACGGCCugGcCGuCGGUGCgCGcGACg -3'
miRNA:   3'- aCUGCCGGugC-GC-GCUACGaGU-CUGa -5'
12825 5' -57.8 NC_003387.1 + 5035 0.69 0.358887
Target:  5'- gGGCGGCgCuGCGCGaguCGGUGCUCAG-Cg -3'
miRNA:   3'- aCUGCCG-G-UGCGC---GCUACGAGUCuGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.