miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12826 3' -60.7 NC_003387.1 + 37788 0.66 0.428133
Target:  5'- gCGCGCCu-GGGcGCAGCAcccGCggUCGCa- -3'
miRNA:   3'- -GUGCGGcuCCC-CGUCGU---CGa-AGCGcu -5'
12826 3' -60.7 NC_003387.1 + 14810 0.66 0.418878
Target:  5'- -gUGCCGAGccacgcGGGCAGCGGg-UCGCc- -3'
miRNA:   3'- guGCGGCUC------CCCGUCGUCgaAGCGcu -5'
12826 3' -60.7 NC_003387.1 + 38046 0.66 0.418878
Target:  5'- gGCGCCccgaucGGGCGGUGGCUgaGCGAg -3'
miRNA:   3'- gUGCGGcuc---CCCGUCGUCGAagCGCU- -5'
12826 3' -60.7 NC_003387.1 + 33478 0.66 0.418878
Target:  5'- -uCGCCGAGGcGGuCGGC-GCc-CGCGAu -3'
miRNA:   3'- guGCGGCUCC-CC-GUCGuCGaaGCGCU- -5'
12826 3' -60.7 NC_003387.1 + 4420 0.66 0.418878
Target:  5'- gACGCCGAGcuGGGCAa-GGCgUUCGcCGAg -3'
miRNA:   3'- gUGCGGCUC--CCCGUcgUCG-AAGC-GCU- -5'
12826 3' -60.7 NC_003387.1 + 16651 0.66 0.418878
Target:  5'- uGCGCCucGGGGUgcaggcucuugAGCAGCUUUugaucgagGCGGu -3'
miRNA:   3'- gUGCGGcuCCCCG-----------UCGUCGAAG--------CGCU- -5'
12826 3' -60.7 NC_003387.1 + 994 0.66 0.418878
Target:  5'- gGCGCCGAccGGGGUcggaugcgcuGCGGCcUUGCGu -3'
miRNA:   3'- gUGCGGCU--CCCCGu---------CGUCGaAGCGCu -5'
12826 3' -60.7 NC_003387.1 + 18195 0.66 0.409747
Target:  5'- gCGgGUCGAcGGGCAGCccgAGgaUCGCGGc -3'
miRNA:   3'- -GUgCGGCUcCCCGUCG---UCgaAGCGCU- -5'
12826 3' -60.7 NC_003387.1 + 12820 0.66 0.409747
Target:  5'- gACGUCGAaGGGCGGCaagccgaagGGCggCGUGGa -3'
miRNA:   3'- gUGCGGCUcCCCGUCG---------UCGaaGCGCU- -5'
12826 3' -60.7 NC_003387.1 + 4288 0.66 0.409747
Target:  5'- gAgGCCGc-GGGCgAGCAGCgcacCGCGAc -3'
miRNA:   3'- gUgCGGCucCCCG-UCGUCGaa--GCGCU- -5'
12826 3' -60.7 NC_003387.1 + 32525 0.66 0.409747
Target:  5'- gCACGCCcggccgugcGAGGcGCAGCAGCgcaucaacCGCGc -3'
miRNA:   3'- -GUGCGG---------CUCCcCGUCGUCGaa------GCGCu -5'
12826 3' -60.7 NC_003387.1 + 47948 0.66 0.40074
Target:  5'- gACGCCGuGuGGGCcGCgaAGCacCGCGAg -3'
miRNA:   3'- gUGCGGCuC-CCCGuCG--UCGaaGCGCU- -5'
12826 3' -60.7 NC_003387.1 + 39621 0.66 0.40074
Target:  5'- -uCGCCGAGGuGGCGGCAugaGCcUCGa-- -3'
miRNA:   3'- guGCGGCUCC-CCGUCGU---CGaAGCgcu -5'
12826 3' -60.7 NC_003387.1 + 19509 0.66 0.40074
Target:  5'- cCAuCGCCGAGcGGGCcucGCGcuugcGCUgCGCGAu -3'
miRNA:   3'- -GU-GCGGCUC-CCCGu--CGU-----CGAaGCGCU- -5'
12826 3' -60.7 NC_003387.1 + 19620 0.66 0.383109
Target:  5'- gACGCCGcgaAGGGcGCgacgGGCGGCUcgaUCaGCGAc -3'
miRNA:   3'- gUGCGGC---UCCC-CG----UCGUCGA---AG-CGCU- -5'
12826 3' -60.7 NC_003387.1 + 42047 0.67 0.37449
Target:  5'- -cCGCCGAGGcGGCcguggucGCAGCcgCGuCGAg -3'
miRNA:   3'- guGCGGCUCC-CCGu------CGUCGaaGC-GCU- -5'
12826 3' -60.7 NC_003387.1 + 49188 0.67 0.37449
Target:  5'- aGCaGCCGccuGGGGCGGCGGCggggGCa- -3'
miRNA:   3'- gUG-CGGCu--CCCCGUCGUCGaag-CGcu -5'
12826 3' -60.7 NC_003387.1 + 11064 0.67 0.355169
Target:  5'- gGCGCCGAgguuauGGGGCcgaucuuuaagggcGuGCAGCcgcUCGCGAc -3'
miRNA:   3'- gUGCGGCU------CCCCG--------------U-CGUCGa--AGCGCU- -5'
12826 3' -60.7 NC_003387.1 + 5924 0.67 0.341346
Target:  5'- aCGCGCCG-GGGGCuGacaacaGGUUuccgCGCGAg -3'
miRNA:   3'- -GUGCGGCuCCCCGuCg-----UCGAa---GCGCU- -5'
12826 3' -60.7 NC_003387.1 + 35655 0.67 0.341346
Target:  5'- aCugGCCGAccucgaccGcGGGCGGUGGCUgaGCGGg -3'
miRNA:   3'- -GugCGGCU--------C-CCCGUCGUCGAagCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.