miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12826 5' -57.7 NC_003387.1 + 29804 0.66 0.541285
Target:  5'- ---aUCGAGgacUAGCgucacccGCCCGGCC-CGUa -3'
miRNA:   3'- aaagAGCUC---AUCGa------CGGGCCGGuGCA- -5'
12826 5' -57.7 NC_003387.1 + 51947 0.66 0.541285
Target:  5'- --gCUCGcugAGaAGCUGCCCGacgucgcuGCCGCGg -3'
miRNA:   3'- aaaGAGC---UCaUCGACGGGC--------CGGUGCa -5'
12826 5' -57.7 NC_003387.1 + 23488 0.66 0.541285
Target:  5'- --gUUCGAGcGGCgguucuggUGCCCGGCCAa-- -3'
miRNA:   3'- aaaGAGCUCaUCG--------ACGGGCCGGUgca -5'
12826 5' -57.7 NC_003387.1 + 48405 0.66 0.509443
Target:  5'- cUUCUCGGcGUugAGCcacUGCCgGGUCGCGg -3'
miRNA:   3'- aAAGAGCU-CA--UCG---ACGGgCCGGUGCa -5'
12826 5' -57.7 NC_003387.1 + 12454 0.66 0.509443
Target:  5'- --gUUCGcuGGcGGCgGCCUGGCCGCGg -3'
miRNA:   3'- aaaGAGC--UCaUCGaCGGGCCGGUGCa -5'
12826 5' -57.7 NC_003387.1 + 45597 0.66 0.509443
Target:  5'- --cCUCGcGUGGCUGaucgaCCGGCUGCa- -3'
miRNA:   3'- aaaGAGCuCAUCGACg----GGCCGGUGca -5'
12826 5' -57.7 NC_003387.1 + 23023 0.66 0.509443
Target:  5'- --gCUCGAcGcAGCaguucaacgUGCCCGGCgGCGUg -3'
miRNA:   3'- aaaGAGCU-CaUCG---------ACGGGCCGgUGCA- -5'
12826 5' -57.7 NC_003387.1 + 42708 0.67 0.488657
Target:  5'- --gCUCGucgucGUcGUcGCCCGGCCGCGg -3'
miRNA:   3'- aaaGAGCu----CAuCGaCGGGCCGGUGCa -5'
12826 5' -57.7 NC_003387.1 + 52077 0.67 0.478414
Target:  5'- gUUCaUCGGGcgucGCUGCCgCGGCgGCGa -3'
miRNA:   3'- aAAG-AGCUCau--CGACGG-GCCGgUGCa -5'
12826 5' -57.7 NC_003387.1 + 25446 0.67 0.478414
Target:  5'- --aCUCGcAGggcgcGCUGCCCGcGUCGCGg -3'
miRNA:   3'- aaaGAGC-UCau---CGACGGGC-CGGUGCa -5'
12826 5' -57.7 NC_003387.1 + 3489 0.67 0.478414
Target:  5'- ---gUCGAGcAGCcGCUCGGCCGCc- -3'
miRNA:   3'- aaagAGCUCaUCGaCGGGCCGGUGca -5'
12826 5' -57.7 NC_003387.1 + 7371 0.67 0.478414
Target:  5'- --aCUCGAGcgcgucgccugAGCUGCacggaUCGGCCGCGg -3'
miRNA:   3'- aaaGAGCUCa----------UCGACG-----GGCCGGUGCa -5'
12826 5' -57.7 NC_003387.1 + 27494 0.67 0.468278
Target:  5'- -cUUUCGAGcGGCUGUggcgcgaagauCCGGCCGCc- -3'
miRNA:   3'- aaAGAGCUCaUCGACG-----------GGCCGGUGca -5'
12826 5' -57.7 NC_003387.1 + 38612 0.68 0.428888
Target:  5'- ---aUCGAGgcGCUGUUCGGCC-CGc -3'
miRNA:   3'- aaagAGCUCauCGACGGGCCGGuGCa -5'
12826 5' -57.7 NC_003387.1 + 27883 0.68 0.419349
Target:  5'- ---gUCGAGcAGgaGCCCGGCCAg-- -3'
miRNA:   3'- aaagAGCUCaUCgaCGGGCCGGUgca -5'
12826 5' -57.7 NC_003387.1 + 22990 0.68 0.409939
Target:  5'- --gCUCGcccgcGUAGCUGCCgucguCGGCCugGg -3'
miRNA:   3'- aaaGAGCu----CAUCGACGG-----GCCGGugCa -5'
12826 5' -57.7 NC_003387.1 + 30405 0.68 0.409939
Target:  5'- ---aUCGuGUGGCUGCCCGaGCUGuCGg -3'
miRNA:   3'- aaagAGCuCAUCGACGGGC-CGGU-GCa -5'
12826 5' -57.7 NC_003387.1 + 18288 0.68 0.391521
Target:  5'- --aCUCGAccAGCgccGaCCCGGCCGCGg -3'
miRNA:   3'- aaaGAGCUcaUCGa--C-GGGCCGGUGCa -5'
12826 5' -57.7 NC_003387.1 + 22456 0.7 0.315579
Target:  5'- ----aCGAGUGGCUGCCCGaCCcCGg -3'
miRNA:   3'- aaagaGCUCAUCGACGGGCcGGuGCa -5'
12826 5' -57.7 NC_003387.1 + 44582 0.7 0.307862
Target:  5'- ---gUCGcGGUcGCUGCCCGGCCGgGa -3'
miRNA:   3'- aaagAGC-UCAuCGACGGGCCGGUgCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.