Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12826 | 5' | -57.7 | NC_003387.1 | + | 23488 | 0.66 | 0.541285 |
Target: 5'- --gUUCGAGcGGCgguucuggUGCCCGGCCAa-- -3' miRNA: 3'- aaaGAGCUCaUCG--------ACGGGCCGGUgca -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 18288 | 0.68 | 0.391521 |
Target: 5'- --aCUCGAccAGCgccGaCCCGGCCGCGg -3' miRNA: 3'- aaaGAGCUcaUCGa--C-GGGCCGGUGCa -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 30405 | 0.68 | 0.409939 |
Target: 5'- ---aUCGuGUGGCUGCCCGaGCUGuCGg -3' miRNA: 3'- aaagAGCuCAUCGACGGGC-CGGU-GCa -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 27883 | 0.68 | 0.419349 |
Target: 5'- ---gUCGAGcAGgaGCCCGGCCAg-- -3' miRNA: 3'- aaagAGCUCaUCgaCGGGCCGGUgca -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 38612 | 0.68 | 0.428888 |
Target: 5'- ---aUCGAGgcGCUGUUCGGCC-CGc -3' miRNA: 3'- aaagAGCUCauCGACGGGCCGGuGCa -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 27494 | 0.67 | 0.468278 |
Target: 5'- -cUUUCGAGcGGCUGUggcgcgaagauCCGGCCGCc- -3' miRNA: 3'- aaAGAGCUCaUCGACG-----------GGCCGGUGca -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 25446 | 0.67 | 0.478414 |
Target: 5'- --aCUCGcAGggcgcGCUGCCCGcGUCGCGg -3' miRNA: 3'- aaaGAGC-UCau---CGACGGGC-CGGUGCa -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 45597 | 0.66 | 0.509443 |
Target: 5'- --cCUCGcGUGGCUGaucgaCCGGCUGCa- -3' miRNA: 3'- aaaGAGCuCAUCGACg----GGCCGGUGca -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 12454 | 0.66 | 0.509443 |
Target: 5'- --gUUCGcuGGcGGCgGCCUGGCCGCGg -3' miRNA: 3'- aaaGAGC--UCaUCGaCGGGCCGGUGCa -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 22456 | 0.7 | 0.315579 |
Target: 5'- ----aCGAGUGGCUGCCCGaCCcCGg -3' miRNA: 3'- aaagaGCUCAUCGACGGGCcGGuGCa -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 45193 | 0.72 | 0.232404 |
Target: 5'- ---aUCGGGU-GUUGCCCGGCC-CGUu -3' miRNA: 3'- aaagAGCUCAuCGACGGGCCGGuGCA- -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 45368 | 0.72 | 0.230582 |
Target: 5'- --gCUCGAGUuuuugccggcgguuAGCUgcGCCCGGCCGCc- -3' miRNA: 3'- aaaGAGCUCA--------------UCGA--CGGGCCGGUGca -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 51947 | 0.66 | 0.541285 |
Target: 5'- --gCUCGcugAGaAGCUGCCCGacgucgcuGCCGCGg -3' miRNA: 3'- aaaGAGC---UCaUCGACGGGC--------CGGUGCa -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 29804 | 0.66 | 0.541285 |
Target: 5'- ---aUCGAGgacUAGCgucacccGCCCGGCC-CGUa -3' miRNA: 3'- aaagAGCUC---AUCGa------CGGGCCGGuGCA- -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 23023 | 0.66 | 0.509443 |
Target: 5'- --gCUCGAcGcAGCaguucaacgUGCCCGGCgGCGUg -3' miRNA: 3'- aaaGAGCU-CaUCG---------ACGGGCCGgUGCA- -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 36710 | 0.76 | 0.1174 |
Target: 5'- -aUCUCGAcccgGUcgAGCUGCCCGGCCuCGa -3' miRNA: 3'- aaAGAGCU----CA--UCGACGGGCCGGuGCa -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 22990 | 0.68 | 0.409939 |
Target: 5'- --gCUCGcccgcGUAGCUGCCgucguCGGCCugGg -3' miRNA: 3'- aaaGAGCu----CAUCGACGG-----GCCGGugCa -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 44582 | 0.7 | 0.307862 |
Target: 5'- ---gUCGcGGUcGCUGCCCGGCCGgGa -3' miRNA: 3'- aaagAGC-UCAuCGACGGGCCGGUgCa -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 25589 | 0.92 | 0.007861 |
Target: 5'- aUUUCUCGAugAGCUGCCCGGCCACGUa -3' miRNA: 3'- -AAAGAGCUcaUCGACGGGCCGGUGCA- -5' |
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12826 | 5' | -57.7 | NC_003387.1 | + | 52077 | 0.67 | 0.478414 |
Target: 5'- gUUCaUCGGGcgucGCUGCCgCGGCgGCGa -3' miRNA: 3'- aAAG-AGCUCau--CGACGG-GCCGgUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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