miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12827 5' -48.4 NC_003387.1 + 52600 0.66 0.981657
Target:  5'- gCGAGGGCGAccgcAUCGAGGcGGgcgCGc -3'
miRNA:   3'- -GCUUUCGCUucauUAGCUCCaCCa--GC- -5'
12827 5' -48.4 NC_003387.1 + 33466 0.66 0.976639
Target:  5'- aGgcGGcCGAAGUcgcCGAGGcGGUCGg -3'
miRNA:   3'- gCuuUC-GCUUCAuuaGCUCCaCCAGC- -5'
12827 5' -48.4 NC_003387.1 + 44376 0.66 0.973782
Target:  5'- cCGAAcAGCGGcacgucggGGUcGUCGAGGUcGGcCGg -3'
miRNA:   3'- -GCUU-UCGCU--------UCAuUAGCUCCA-CCaGC- -5'
12827 5' -48.4 NC_003387.1 + 45143 0.66 0.97068
Target:  5'- uCGAGGcGCGgcGc--UCgGAGGUGGUCGc -3'
miRNA:   3'- -GCUUU-CGCuuCauuAG-CUCCACCAGC- -5'
12827 5' -48.4 NC_003387.1 + 42828 0.67 0.967323
Target:  5'- aCGgcGGCGAGGcgaucauggcggcGAUCGAGGUcgugcagucgaucaaGGUCGa -3'
miRNA:   3'- -GCuuUCGCUUCa------------UUAGCUCCA---------------CCAGC- -5'
12827 5' -48.4 NC_003387.1 + 6931 0.67 0.959811
Target:  5'- aCGggGGCGGuu--AUCGGGGUGcGUg- -3'
miRNA:   3'- -GCuuUCGCUucauUAGCUCCAC-CAgc -5'
12827 5' -48.4 NC_003387.1 + 3612 0.68 0.936071
Target:  5'- uGAcAGCG-GGUGcgcGUCGAGGUGcUCGa -3'
miRNA:   3'- gCUuUCGCuUCAU---UAGCUCCACcAGC- -5'
12827 5' -48.4 NC_003387.1 + 14716 0.69 0.914383
Target:  5'- gCGGGucuGGCGAGGUGuggauucaggacggcAUCGAGGgccggaUGGUCa -3'
miRNA:   3'- -GCUU---UCGCUUCAU---------------UAGCUCC------ACCAGc -5'
12827 5' -48.4 NC_003387.1 + 20159 0.7 0.874675
Target:  5'- gCGAAccCGAGGgcGUCGAGGgcgcGGUUGa -3'
miRNA:   3'- -GCUUucGCUUCauUAGCUCCa---CCAGC- -5'
12827 5' -48.4 NC_003387.1 + 43832 0.73 0.738668
Target:  5'- gCGAGGGCGAGGccgaGGUCGGGGcGGUg- -3'
miRNA:   3'- -GCUUUCGCUUCa---UUAGCUCCaCCAgc -5'
12827 5' -48.4 NC_003387.1 + 313 0.81 0.336449
Target:  5'- aCGAcAGCGG----GUCGAGGUGGUCGg -3'
miRNA:   3'- -GCUuUCGCUucauUAGCUCCACCAGC- -5'
12827 5' -48.4 NC_003387.1 + 25246 1.11 0.004174
Target:  5'- uCGAAAGCGAAGUAAUCGAGGUGGUCGg -3'
miRNA:   3'- -GCUUUCGCUUCAUUAGCUCCACCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.