miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12828 3' -56.1 NC_003387.1 + 31054 0.66 0.702759
Target:  5'- cGUCGGcgaacacguGCUCGGCCGcCGccGCGGUcgACg -3'
miRNA:   3'- aCAGCU---------UGAGCUGGCuGCc-CGCCA--UG- -5'
12828 3' -56.1 NC_003387.1 + 36138 0.66 0.702759
Target:  5'- cGUCGAG--UGAgccCCGACGaGGCGGUcgGCc -3'
miRNA:   3'- aCAGCUUgaGCU---GGCUGC-CCGCCA--UG- -5'
12828 3' -56.1 NC_003387.1 + 41073 0.66 0.69207
Target:  5'- cUGUCGAcg-CGAUCGAgGGGCGa--- -3'
miRNA:   3'- -ACAGCUugaGCUGGCUgCCCGCcaug -5'
12828 3' -56.1 NC_003387.1 + 21639 0.66 0.681324
Target:  5'- cGUCGAGCgucagcucgUCGACCG-CG-GCGGcgGCc -3'
miRNA:   3'- aCAGCUUG---------AGCUGGCuGCcCGCCa-UG- -5'
12828 3' -56.1 NC_003387.1 + 1116 0.66 0.681324
Target:  5'- cG-CGggUUCGGCCGugGGuucgcCGGUGu -3'
miRNA:   3'- aCaGCuuGAGCUGGCugCCc----GCCAUg -5'
12828 3' -56.1 NC_003387.1 + 51760 0.66 0.681324
Target:  5'- aGUCu--CUgCGGCCGuGCGGGUccGGUGCg -3'
miRNA:   3'- aCAGcuuGA-GCUGGC-UGCCCG--CCAUG- -5'
12828 3' -56.1 NC_003387.1 + 52266 0.66 0.681324
Target:  5'- gGUCGccgUCGGCCGcCGcGGCGGcgACa -3'
miRNA:   3'- aCAGCuugAGCUGGCuGC-CCGCCa-UG- -5'
12828 3' -56.1 NC_003387.1 + 44602 0.66 0.670532
Target:  5'- aGUCGAGCgacGCCGuCGGGCcGUGg -3'
miRNA:   3'- aCAGCUUGagcUGGCuGCCCGcCAUg -5'
12828 3' -56.1 NC_003387.1 + 14151 0.66 0.670532
Target:  5'- gUGUCGAGCUUGACuCGAaaCGucaUGGUGCg -3'
miRNA:   3'- -ACAGCUUGAGCUG-GCU--GCcc-GCCAUG- -5'
12828 3' -56.1 NC_003387.1 + 6362 0.66 0.670532
Target:  5'- gUGUCGcgcuuggcCUCGGCCG-CGGGCGa--- -3'
miRNA:   3'- -ACAGCuu------GAGCUGGCuGCCCGCcaug -5'
12828 3' -56.1 NC_003387.1 + 14869 0.66 0.659705
Target:  5'- cGUCGAGg-CGAgCCGcCGGGCgcaggGGUGCc -3'
miRNA:   3'- aCAGCUUgaGCU-GGCuGCCCG-----CCAUG- -5'
12828 3' -56.1 NC_003387.1 + 32890 0.66 0.658621
Target:  5'- cGUCGAgagauugAUUCGACCcGCGGGUGccggACa -3'
miRNA:   3'- aCAGCU-------UGAGCUGGcUGCCCGCca--UG- -5'
12828 3' -56.1 NC_003387.1 + 18390 0.67 0.648853
Target:  5'- cGUCGA--UCGGCugCGACGGGuCGGccGCg -3'
miRNA:   3'- aCAGCUugAGCUG--GCUGCCC-GCCa-UG- -5'
12828 3' -56.1 NC_003387.1 + 20465 0.67 0.637987
Target:  5'- uUGUCGGcCUCGG-CGACGgccaGGCGGUcgGCc -3'
miRNA:   3'- -ACAGCUuGAGCUgGCUGC----CCGCCA--UG- -5'
12828 3' -56.1 NC_003387.1 + 12439 0.67 0.637987
Target:  5'- cGUCGucCUCGAUCGAgGGGUcGcGCa -3'
miRNA:   3'- aCAGCuuGAGCUGGCUgCCCGcCaUG- -5'
12828 3' -56.1 NC_003387.1 + 19940 0.67 0.637987
Target:  5'- gGUCGAcC-CGGCgguacgCGGCGGGUGGuUGCg -3'
miRNA:   3'- aCAGCUuGaGCUG------GCUGCCCGCC-AUG- -5'
12828 3' -56.1 NC_003387.1 + 19609 0.67 0.636899
Target:  5'- aGUCGuucCUUGACgccgcgaagggcgCGACGGGCGGc-- -3'
miRNA:   3'- aCAGCuu-GAGCUG-------------GCUGCCCGCCaug -5'
12828 3' -56.1 NC_003387.1 + 17140 0.67 0.627115
Target:  5'- gUGUCGAccaGCUCGGCCa--GGGCgccgaGGUAg -3'
miRNA:   3'- -ACAGCU---UGAGCUGGcugCCCG-----CCAUg -5'
12828 3' -56.1 NC_003387.1 + 1496 0.67 0.627115
Target:  5'- cGUCGAGCaccaggccgCGGCCGACGugcaGGCucagcaccucGGUGCc -3'
miRNA:   3'- aCAGCUUGa--------GCUGGCUGC----CCG----------CCAUG- -5'
12828 3' -56.1 NC_003387.1 + 27910 0.67 0.627115
Target:  5'- cG-CGGcCUUGACCGGCGGcGUGG-GCg -3'
miRNA:   3'- aCaGCUuGAGCUGGCUGCC-CGCCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.