miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12828 3' -56.1 NC_003387.1 + 34059 0.67 0.627115
Target:  5'- cGaCGAACUCGAaaUCGguuaGCGGGCGGc-- -3'
miRNA:   3'- aCaGCUUGAGCU--GGC----UGCCCGCCaug -5'
12828 3' -56.1 NC_003387.1 + 27910 0.67 0.627115
Target:  5'- cG-CGGcCUUGACCGGCGGcGUGG-GCg -3'
miRNA:   3'- aCaGCUuGAGCUGGCUGCC-CGCCaUG- -5'
12828 3' -56.1 NC_003387.1 + 27781 0.67 0.616247
Target:  5'- gUGUCGcuAGCU-GACCGGCugagcaccccGGCGGUGCc -3'
miRNA:   3'- -ACAGC--UUGAgCUGGCUGc---------CCGCCAUG- -5'
12828 3' -56.1 NC_003387.1 + 24723 0.67 0.616247
Target:  5'- cGUCGGugccCUCGAU---CGGGCGGUAa -3'
miRNA:   3'- aCAGCUu---GAGCUGgcuGCCCGCCAUg -5'
12828 3' -56.1 NC_003387.1 + 39560 0.67 0.616247
Target:  5'- gGUCGcGCUCGGCCuucuGCacGCGGUGCu -3'
miRNA:   3'- aCAGCuUGAGCUGGc---UGccCGCCAUG- -5'
12828 3' -56.1 NC_003387.1 + 5426 0.67 0.616247
Target:  5'- cGcCGAggacaACUCGACCGA-GGGCGccgACg -3'
miRNA:   3'- aCaGCU-----UGAGCUGGCUgCCCGCca-UG- -5'
12828 3' -56.1 NC_003387.1 + 21125 0.67 0.616247
Target:  5'- cGUCGAAaacaCGGCCGACaugguucaGGCGGUcaaGCa -3'
miRNA:   3'- aCAGCUUga--GCUGGCUGc-------CCGCCA---UG- -5'
12828 3' -56.1 NC_003387.1 + 21056 0.67 0.615161
Target:  5'- cGUCGAACgccgcguauaUCGugcucuugggcauGCUGACgcgcuuagccaGGGCGGUGCg -3'
miRNA:   3'- aCAGCUUG----------AGC-------------UGGCUG-----------CCCGCCAUG- -5'
12828 3' -56.1 NC_003387.1 + 20615 0.67 0.605393
Target:  5'- cUGUCGaguucuGugUCGAaaCCGGCGGGCaauGUGCc -3'
miRNA:   3'- -ACAGC------UugAGCU--GGCUGCCCGc--CAUG- -5'
12828 3' -56.1 NC_003387.1 + 6840 0.67 0.594561
Target:  5'- gGUCGAucgcccGCUCGGCCG-CGGcGCGcaGCc -3'
miRNA:   3'- aCAGCU------UGAGCUGGCuGCC-CGCcaUG- -5'
12828 3' -56.1 NC_003387.1 + 41957 0.68 0.58376
Target:  5'- cGUCGAgGCUCGuACCGGCGaucGCGGc-- -3'
miRNA:   3'- aCAGCU-UGAGC-UGGCUGCc--CGCCaug -5'
12828 3' -56.1 NC_003387.1 + 41846 0.68 0.572999
Target:  5'- gGUCGGccagCGGCCGACGG-CGGUc- -3'
miRNA:   3'- aCAGCUuga-GCUGGCUGCCcGCCAug -5'
12828 3' -56.1 NC_003387.1 + 48243 0.68 0.572999
Target:  5'- cG-CGGGCUCGGCCuuCGcGGCGGg-- -3'
miRNA:   3'- aCaGCUUGAGCUGGcuGC-CCGCCaug -5'
12828 3' -56.1 NC_003387.1 + 48829 0.68 0.551625
Target:  5'- gGUCGugcuGCUCGGCgCGACGcacGGC-GUGCa -3'
miRNA:   3'- aCAGCu---UGAGCUG-GCUGC---CCGcCAUG- -5'
12828 3' -56.1 NC_003387.1 + 156 0.68 0.551625
Target:  5'- cGcCGAGCUgggccugcUGGCCGACGGcaagaCGGUGCu -3'
miRNA:   3'- aCaGCUUGA--------GCUGGCUGCCc----GCCAUG- -5'
12828 3' -56.1 NC_003387.1 + 24252 0.68 0.5305
Target:  5'- cGUCGAGCUUGACCu-CGGGgGccGCc -3'
miRNA:   3'- aCAGCUUGAGCUGGcuGCCCgCcaUG- -5'
12828 3' -56.1 NC_003387.1 + 42717 0.68 0.5305
Target:  5'- cGUCGucGCcCGGCCGcgggaACGGGUcgGGUGCg -3'
miRNA:   3'- aCAGCu-UGaGCUGGC-----UGCCCG--CCAUG- -5'
12828 3' -56.1 NC_003387.1 + 22605 0.69 0.520048
Target:  5'- gGUCGaAGCUCaGGCCcuUGcGGCGGUACc -3'
miRNA:   3'- aCAGC-UUGAG-CUGGcuGC-CCGCCAUG- -5'
12828 3' -56.1 NC_003387.1 + 44614 0.69 0.520048
Target:  5'- cGUaCGAGCUgGGCuCGcccuCGGGCGGguugGCg -3'
miRNA:   3'- aCA-GCUUGAgCUG-GCu---GCCCGCCa---UG- -5'
12828 3' -56.1 NC_003387.1 + 34245 0.69 0.508645
Target:  5'- -cUCGGggcGCUCGACCGGCugaucgccgagucGGGCgucacGGUGCg -3'
miRNA:   3'- acAGCU---UGAGCUGGCUG-------------CCCG-----CCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.