miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12828 3' -56.1 NC_003387.1 + 35658 0.8 0.113966
Target:  5'- gGcCGAcCUCGACCG-CGGGCGGUGg -3'
miRNA:   3'- aCaGCUuGAGCUGGCuGCCCGCCAUg -5'
12828 3' -56.1 NC_003387.1 + 19609 0.67 0.636899
Target:  5'- aGUCGuucCUUGACgccgcgaagggcgCGACGGGCGGc-- -3'
miRNA:   3'- aCAGCuu-GAGCUG-------------GCUGCCCGCCaug -5'
12828 3' -56.1 NC_003387.1 + 1116 0.66 0.681324
Target:  5'- cG-CGggUUCGGCCGugGGuucgcCGGUGu -3'
miRNA:   3'- aCaGCuuGAGCUGGCugCCc----GCCAUg -5'
12828 3' -56.1 NC_003387.1 + 36138 0.66 0.702759
Target:  5'- cGUCGAG--UGAgccCCGACGaGGCGGUcgGCc -3'
miRNA:   3'- aCAGCUUgaGCU---GGCUGC-CCGCCA--UG- -5'
12828 3' -56.1 NC_003387.1 + 24864 0.72 0.326074
Target:  5'- gGUgGcuGGCUCGACCu-CGGGCGGUGg -3'
miRNA:   3'- aCAgC--UUGAGCUGGcuGCCCGCCAUg -5'
12828 3' -56.1 NC_003387.1 + 47576 0.72 0.326074
Target:  5'- gUGUCGGugaaGCUCGACCGAuCGGGUcGcACg -3'
miRNA:   3'- -ACAGCU----UGAGCUGGCU-GCCCGcCaUG- -5'
12828 3' -56.1 NC_003387.1 + 14511 0.7 0.466149
Target:  5'- cUGUCGA--UCGAcCCGACGGGCaacgacaacaacucGGUGa -3'
miRNA:   3'- -ACAGCUugAGCU-GGCUGCCCG--------------CCAUg -5'
12828 3' -56.1 NC_003387.1 + 2707 0.69 0.499395
Target:  5'- gGUUGuGCUCGGCgacGCGGGCGGcggGCa -3'
miRNA:   3'- aCAGCuUGAGCUGgc-UGCCCGCCa--UG- -5'
12828 3' -56.1 NC_003387.1 + 48829 0.68 0.551625
Target:  5'- gGUCGugcuGCUCGGCgCGACGcacGGC-GUGCa -3'
miRNA:   3'- aCAGCu---UGAGCUG-GCUGC---CCGcCAUG- -5'
12828 3' -56.1 NC_003387.1 + 21125 0.67 0.616247
Target:  5'- cGUCGAAaacaCGGCCGACaugguucaGGCGGUcaaGCa -3'
miRNA:   3'- aCAGCUUga--GCUGGCUGc-------CCGCCA---UG- -5'
12828 3' -56.1 NC_003387.1 + 20615 0.67 0.605393
Target:  5'- cUGUCGaguucuGugUCGAaaCCGGCGGGCaauGUGCc -3'
miRNA:   3'- -ACAGC------UugAGCU--GGCUGCCCGc--CAUG- -5'
12828 3' -56.1 NC_003387.1 + 156 0.68 0.551625
Target:  5'- cGcCGAGCUgggccugcUGGCCGACGGcaagaCGGUGCu -3'
miRNA:   3'- aCaGCUUGA--------GCUGGCUGCCc----GCCAUG- -5'
12828 3' -56.1 NC_003387.1 + 19126 0.78 0.14604
Target:  5'- aGUCGAucaUCGAcCCGAcCGGGCGGUGg -3'
miRNA:   3'- aCAGCUug-AGCU-GGCU-GCCCGCCAUg -5'
12828 3' -56.1 NC_003387.1 + 27781 0.67 0.616247
Target:  5'- gUGUCGcuAGCU-GACCGGCugagcaccccGGCGGUGCc -3'
miRNA:   3'- -ACAGC--UUGAgCUGGCUGc---------CCGCCAUG- -5'
12828 3' -56.1 NC_003387.1 + 33683 0.76 0.191161
Target:  5'- gGUCGAcCUCGACuCGGCGaccGGCGGUGu -3'
miRNA:   3'- aCAGCUuGAGCUG-GCUGC---CCGCCAUg -5'
12828 3' -56.1 NC_003387.1 + 34245 0.69 0.508645
Target:  5'- -cUCGGggcGCUCGACCGGCugaucgccgagucGGGCgucacGGUGCg -3'
miRNA:   3'- acAGCU---UGAGCUGGCUG-------------CCCG-----CCAUG- -5'
12828 3' -56.1 NC_003387.1 + 5426 0.67 0.616247
Target:  5'- cGcCGAggacaACUCGACCGA-GGGCGccgACg -3'
miRNA:   3'- aCaGCU-----UGAGCUGGCUgCCCGCca-UG- -5'
12828 3' -56.1 NC_003387.1 + 44602 0.66 0.670532
Target:  5'- aGUCGAGCgacGCCGuCGGGCcGUGg -3'
miRNA:   3'- aCAGCUUGagcUGGCuGCCCGcCAUg -5'
12828 3' -56.1 NC_003387.1 + 45994 0.75 0.212411
Target:  5'- aUGUCGAGCggggCGAgUCGACGGugaacugcccGCGGUGCa -3'
miRNA:   3'- -ACAGCUUGa---GCU-GGCUGCC----------CGCCAUG- -5'
12828 3' -56.1 NC_003387.1 + 28085 0.7 0.459244
Target:  5'- cGUCGAACcuaUCGACCa--GGGCGGcaACg -3'
miRNA:   3'- aCAGCUUG---AGCUGGcugCCCGCCa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.