miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12828 5' -65 NC_003387.1 + 15354 0.66 0.275301
Target:  5'- gGGGCGCCGCCGcccgacaGGUGCcgcagauagcgCAGCCc-- -3'
miRNA:   3'- -CCCGUGGCGGCc------CCACGa----------GUCGGcca -5'
12828 5' -65 NC_003387.1 + 31188 0.66 0.273335
Target:  5'- cGGGCGUCGCCGG--UGCUgauacucagcgcagCGGCCGGc -3'
miRNA:   3'- -CCCGUGGCGGCCccACGA--------------GUCGGCCa -5'
12828 5' -65 NC_003387.1 + 16199 0.66 0.26879
Target:  5'- cGGUGCUGUCGGG--GCUCAGCCu-- -3'
miRNA:   3'- cCCGUGGCGGCCCcaCGAGUCGGcca -5'
12828 5' -65 NC_003387.1 + 31016 0.66 0.26879
Target:  5'- cGGGCcgaGCgugCGCCGGGGcgGCggcCAGCaCGGc -3'
miRNA:   3'- -CCCG---UG---GCGGCCCCa-CGa--GUCG-GCCa -5'
12828 5' -65 NC_003387.1 + 13484 0.66 0.262403
Target:  5'- aGGGCACCaccgacagccCCGGcGG-GUUC-GCCGGUg -3'
miRNA:   3'- -CCCGUGGc---------GGCC-CCaCGAGuCGGCCA- -5'
12828 5' -65 NC_003387.1 + 34396 0.66 0.260511
Target:  5'- cGGGCACgacggccacgccguUGCCGGGcGccaccGCcgCGGCCGGg -3'
miRNA:   3'- -CCCGUG--------------GCGGCCC-Ca----CGa-GUCGGCCa -5'
12828 5' -65 NC_003387.1 + 34844 0.66 0.25614
Target:  5'- cGGC-CCGCgCGGGccuUGCggugagagCAGCCGGa -3'
miRNA:   3'- cCCGuGGCG-GCCCc--ACGa-------GUCGGCCa -5'
12828 5' -65 NC_003387.1 + 49199 0.66 0.25614
Target:  5'- gGGGCGgCGgCGGGGgcaCUgGcGCCGGUu -3'
miRNA:   3'- -CCCGUgGCgGCCCCac-GAgU-CGGCCA- -5'
12828 5' -65 NC_003387.1 + 25472 0.66 0.252442
Target:  5'- aGGCA-UGCCGGGccgccucgaccgcgcGUgucaGCUCGGCCGGg -3'
miRNA:   3'- cCCGUgGCGGCCC---------------CA----CGAGUCGGCCa -5'
12828 5' -65 NC_003387.1 + 48570 0.66 0.248183
Target:  5'- uGGCACCGCCaGGcacacgcagugaucGUGUgaacgCAGCgCGGUg -3'
miRNA:   3'- cCCGUGGCGGcCC--------------CACGa----GUCG-GCCA- -5'
12828 5' -65 NC_003387.1 + 12440 0.66 0.243983
Target:  5'- aGGGCGCUGCCGaGGUucGCUggcggCGGCCuGGc -3'
miRNA:   3'- -CCCGUGGCGGCcCCA--CGA-----GUCGG-CCa -5'
12828 5' -65 NC_003387.1 + 1313 0.67 0.232309
Target:  5'- cGGCGCCGCa--GGcGCUC-GCCGGUc -3'
miRNA:   3'- cCCGUGGCGgccCCaCGAGuCGGCCA- -5'
12828 5' -65 NC_003387.1 + 29979 0.67 0.231738
Target:  5'- aGGUAuCCGCaggugagagGGGGUGCUCGaguuuuuGCCGGc -3'
miRNA:   3'- cCCGU-GGCGg--------CCCCACGAGU-------CGGCCa -5'
12828 5' -65 NC_003387.1 + 46936 0.67 0.22665
Target:  5'- cGGGCACCGaggugucgauCCGcGGcGaGCgCGGCCGGUu -3'
miRNA:   3'- -CCCGUGGC----------GGC-CC-CaCGaGUCGGCCA- -5'
12828 5' -65 NC_003387.1 + 49565 0.67 0.22665
Target:  5'- cGGCcUCGCCGaGGUGCgcccgCuGCCGGg -3'
miRNA:   3'- cCCGuGGCGGCcCCACGa----GuCGGCCa -5'
12828 5' -65 NC_003387.1 + 48853 0.67 0.22665
Target:  5'- cGGcGUGCaCGCCcuGGUGCgCAGCCGGa -3'
miRNA:   3'- -CC-CGUG-GCGGccCCACGaGUCGGCCa -5'
12828 5' -65 NC_003387.1 + 41985 0.67 0.221109
Target:  5'- cGGagGCCGCCGcGGUGCUCAagCGGUg -3'
miRNA:   3'- cCCg-UGGCGGCcCCACGAGUcgGCCA- -5'
12828 5' -65 NC_003387.1 + 27955 0.67 0.210373
Target:  5'- nGGGCGCU--CGGcGUGCUCggcuuGGCCGGUg -3'
miRNA:   3'- -CCCGUGGcgGCCcCACGAG-----UCGGCCA- -5'
12828 5' -65 NC_003387.1 + 23595 0.67 0.210373
Target:  5'- cGGGCuccuauCCGCUGGGGUGUUgauaccccaaCAGCUuaGGc -3'
miRNA:   3'- -CCCGu-----GGCGGCCCCACGA----------GUCGG--CCa -5'
12828 5' -65 NC_003387.1 + 29686 0.68 0.203127
Target:  5'- cGGCacGCCGCCGGGcacguugaacugcUGCgUCgAGCCGGUg -3'
miRNA:   3'- cCCG--UGGCGGCCCc------------ACG-AG-UCGGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.