miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12829 3' -61.1 NC_003387.1 + 14990 0.65 0.417376
Target:  5'- uGCCGUCGaauguugccgcccuCGGCUugucGCGCggGUCG-GCg -3'
miRNA:   3'- uCGGCAGC--------------GCCGA----CGCGaaCGGCuCG- -5'
12829 3' -61.1 NC_003387.1 + 132 0.66 0.411011
Target:  5'- uGCgGUCGCccucGCgauccGCGCc-GCCGAGCu -3'
miRNA:   3'- uCGgCAGCGc---CGa----CGCGaaCGGCUCG- -5'
12829 3' -61.1 NC_003387.1 + 4002 0.66 0.411011
Target:  5'- -cUCGUCGCGGCgcacgGUGCUcgacaacGCCaAGCg -3'
miRNA:   3'- ucGGCAGCGCCGa----CGCGAa------CGGcUCG- -5'
12829 3' -61.1 NC_003387.1 + 39929 0.66 0.411011
Target:  5'- cGGUCGUUGCgaGGC-GCGCaUUGCggcgaucgaguaCGAGCg -3'
miRNA:   3'- -UCGGCAGCG--CCGaCGCG-AACG------------GCUCG- -5'
12829 3' -61.1 NC_003387.1 + 44568 0.66 0.411011
Target:  5'- uGGCCGagaaacacgUCGCGGU--CGCUgcccgGCCGGGa -3'
miRNA:   3'- -UCGGC---------AGCGCCGacGCGAa----CGGCUCg -5'
12829 3' -61.1 NC_003387.1 + 6851 0.66 0.402024
Target:  5'- cGCuCGgcCGCGGC-GCGCa-GCCGcAGCa -3'
miRNA:   3'- uCG-GCa-GCGCCGaCGCGaaCGGC-UCG- -5'
12829 3' -61.1 NC_003387.1 + 26483 0.66 0.402024
Target:  5'- cGGCggUGUUGCGGCuaagaaUGCGCUgcCCGAGg -3'
miRNA:   3'- -UCG--GCAGCGCCG------ACGCGAacGGCUCg -5'
12829 3' -61.1 NC_003387.1 + 42744 0.66 0.402024
Target:  5'- gGGCgUGcUCGgauCGGCUGCGCUggUGCCccGAGUc -3'
miRNA:   3'- -UCG-GC-AGC---GCCGACGCGA--ACGG--CUCG- -5'
12829 3' -61.1 NC_003387.1 + 40943 0.66 0.398464
Target:  5'- gAGCUgGUCGCcaaGgUGCGCgacgcgaucgagGCCGAGCu -3'
miRNA:   3'- -UCGG-CAGCGc--CgACGCGaa----------CGGCUCG- -5'
12829 3' -61.1 NC_003387.1 + 8122 0.66 0.393162
Target:  5'- cAGCuCGUaCGC-GCUGCuGUcccgGCCGGGCa -3'
miRNA:   3'- -UCG-GCA-GCGcCGACG-CGaa--CGGCUCG- -5'
12829 3' -61.1 NC_003387.1 + 13126 0.66 0.393162
Target:  5'- aAGCacacCGCGGC-GCaGCUUgaggacGCCGAGCa -3'
miRNA:   3'- -UCGgca-GCGCCGaCG-CGAA------CGGCUCG- -5'
12829 3' -61.1 NC_003387.1 + 45541 0.66 0.393162
Target:  5'- uGGCCGU-GCGGCaagGCGauccGCCGccAGCu -3'
miRNA:   3'- -UCGGCAgCGCCGa--CGCgaa-CGGC--UCG- -5'
12829 3' -61.1 NC_003387.1 + 50978 0.66 0.393162
Target:  5'- gAGCCGauaGCGGCcggggGCGUuuucguUUGCUGuGCa -3'
miRNA:   3'- -UCGGCag-CGCCGa----CGCG------AACGGCuCG- -5'
12829 3' -61.1 NC_003387.1 + 25843 0.66 0.393162
Target:  5'- uGGCCugcucgGUgGCGGCaaggguggccUGCagUUGCCGAGCg -3'
miRNA:   3'- -UCGG------CAgCGCCG----------ACGcgAACGGCUCG- -5'
12829 3' -61.1 NC_003387.1 + 47139 0.66 0.392283
Target:  5'- cGCCGUCGCGGaucuuugccagcuCggcgGCGUcaGCCuuGAGCu -3'
miRNA:   3'- uCGGCAGCGCC-------------Ga---CGCGaaCGG--CUCG- -5'
12829 3' -61.1 NC_003387.1 + 15949 0.66 0.390529
Target:  5'- cGGCCGacUCGCGccuGCaUGUGCUUGCgguggaggacaauuCGGGCc -3'
miRNA:   3'- -UCGGC--AGCGC---CG-ACGCGAACG--------------GCUCG- -5'
12829 3' -61.1 NC_003387.1 + 44612 0.66 0.390529
Target:  5'- cGCCGUCG-GGCcgugGCGCgagcguguggcccugGCCGcGGCc -3'
miRNA:   3'- uCGGCAGCgCCGa---CGCGaa-------------CGGC-UCG- -5'
12829 3' -61.1 NC_003387.1 + 4422 0.66 0.384429
Target:  5'- cGCCGa-GCugGGCaagGCGUUcGCCGAGCc -3'
miRNA:   3'- uCGGCagCG--CCGa--CGCGAaCGGCUCG- -5'
12829 3' -61.1 NC_003387.1 + 35706 0.66 0.384429
Target:  5'- cAGCCGcCGCGGUUugauuaGCGCccGCuCGGGg -3'
miRNA:   3'- -UCGGCaGCGCCGA------CGCGaaCG-GCUCg -5'
12829 3' -61.1 NC_003387.1 + 44281 0.66 0.384429
Target:  5'- cGCCGcaggUCaGCGGgUGUGCUcgaguuuuUGCCG-GCg -3'
miRNA:   3'- uCGGC----AG-CGCCgACGCGA--------ACGGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.