miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12829 5' -49.3 NC_003387.1 + 45757 0.66 0.973862
Target:  5'- gUCGCCCUcGAcgAGGGCG-GCCAGcAgGGu -3'
miRNA:   3'- -GGCGGGA-CU--UUCUGCuUGGUUaUgCC- -5'
12829 5' -49.3 NC_003387.1 + 29293 0.66 0.973862
Target:  5'- aCGCCCUGuuccccGGCG-ACC---GCGGg -3'
miRNA:   3'- gGCGGGACuuu---CUGCuUGGuuaUGCC- -5'
12829 5' -49.3 NC_003387.1 + 11532 0.66 0.973862
Target:  5'- gUCGCCCUGuuc-GCGcACCAGgccgugcugacUGCGGu -3'
miRNA:   3'- -GGCGGGACuuucUGCuUGGUU-----------AUGCC- -5'
12829 5' -49.3 NC_003387.1 + 22669 0.66 0.973862
Target:  5'- -gGCCCUGAua-ACG-GCCGA-GCGGg -3'
miRNA:   3'- ggCGGGACUuucUGCuUGGUUaUGCC- -5'
12829 5' -49.3 NC_003387.1 + 8175 0.66 0.973862
Target:  5'- -aGCCCUuGAAGucuuuCGAGCCc-UGCGGc -3'
miRNA:   3'- ggCGGGAcUUUCu----GCUUGGuuAUGCC- -5'
12829 5' -49.3 NC_003387.1 + 49610 0.66 0.970816
Target:  5'- gCUGCCgCUGgcGGccccgauuuACGAGCCGGU-CGGc -3'
miRNA:   3'- -GGCGG-GACuuUC---------UGCUUGGUUAuGCC- -5'
12829 5' -49.3 NC_003387.1 + 33569 0.66 0.970816
Target:  5'- gCGCCCUcGAcagcgucGACGAGCCAccgccCGGu -3'
miRNA:   3'- gGCGGGA-CUuu-----CUGCUUGGUuau--GCC- -5'
12829 5' -49.3 NC_003387.1 + 6923 0.66 0.970816
Target:  5'- aCGCCUUGAcgGGGGCGGuuAUCGggGUGCGu -3'
miRNA:   3'- gGCGGGACU--UUCUGCU--UGGU--UAUGCc -5'
12829 5' -49.3 NC_003387.1 + 1842 0.66 0.970816
Target:  5'- aCGCCCUcGAcguucucaAGGGCGAcCCAAUcgaGCGu -3'
miRNA:   3'- gGCGGGA-CU--------UUCUGCUuGGUUA---UGCc -5'
12829 5' -49.3 NC_003387.1 + 15457 0.66 0.967523
Target:  5'- gCGCCUUGAccGccacGCGGGCCGAcACGu -3'
miRNA:   3'- gGCGGGACUuuC----UGCUUGGUUaUGCc -5'
12829 5' -49.3 NC_003387.1 + 3505 0.66 0.967523
Target:  5'- gCCGCCUcGAccGGCaGAuCCGuUGCGGg -3'
miRNA:   3'- -GGCGGGaCUuuCUG-CUuGGUuAUGCC- -5'
12829 5' -49.3 NC_003387.1 + 43475 0.66 0.963975
Target:  5'- aCGUCCUGucGGGGCGGuUC-AUGCGGc -3'
miRNA:   3'- gGCGGGACu-UUCUGCUuGGuUAUGCC- -5'
12829 5' -49.3 NC_003387.1 + 31788 0.66 0.963975
Target:  5'- gCCGCCCUcggGAAcguaauAGACGAACgGGU-CGc -3'
miRNA:   3'- -GGCGGGA---CUU------UCUGCUUGgUUAuGCc -5'
12829 5' -49.3 NC_003387.1 + 24893 0.66 0.960165
Target:  5'- gCGCCCUGuccaccGACGGcACCGgcaaGUGCGu -3'
miRNA:   3'- gGCGGGACuuu---CUGCU-UGGU----UAUGCc -5'
12829 5' -49.3 NC_003387.1 + 3271 0.67 0.956086
Target:  5'- gCCGCCgaaaUGGAcGACGAccCCGAcACGGc -3'
miRNA:   3'- -GGCGGg---ACUUuCUGCUu-GGUUaUGCC- -5'
12829 5' -49.3 NC_003387.1 + 47705 0.67 0.956085
Target:  5'- gCCGCCCucgUGAGccugccgugcuGGuCGAACCAc-GCGGc -3'
miRNA:   3'- -GGCGGG---ACUU-----------UCuGCUUGGUuaUGCC- -5'
12829 5' -49.3 NC_003387.1 + 38891 0.67 0.956085
Target:  5'- aCGCgCC-GAAccGugGAGCgGGUGCGGg -3'
miRNA:   3'- gGCG-GGaCUUu-CugCUUGgUUAUGCC- -5'
12829 5' -49.3 NC_003387.1 + 27439 0.67 0.947096
Target:  5'- gUCGCCCUGGcuGACu-GCCcgauGUGCGa -3'
miRNA:   3'- -GGCGGGACUuuCUGcuUGGu---UAUGCc -5'
12829 5' -49.3 NC_003387.1 + 46068 0.67 0.946617
Target:  5'- aCCGCgCUUGAgcgggucGAcGACGAGCCcaagACGGc -3'
miRNA:   3'- -GGCG-GGACU-------UU-CUGCUUGGuua-UGCC- -5'
12829 5' -49.3 NC_003387.1 + 25428 0.67 0.942177
Target:  5'- gCgGCUCUcAAGGGCc-GCCAGUGCGGc -3'
miRNA:   3'- -GgCGGGAcUUUCUGcuUGGUUAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.