miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12829 5' -49.3 NC_003387.1 + 24541 1.13 0.002836
Target:  5'- gCCGCCCUGAAAGACGAACCAAUACGGc -3'
miRNA:   3'- -GGCGGGACUUUCUGCUUGGUUAUGCC- -5'
12829 5' -49.3 NC_003387.1 + 4606 0.76 0.532711
Target:  5'- uCUGCCacgUGAucGGCGAGCCAccGCGGg -3'
miRNA:   3'- -GGCGGg--ACUuuCUGCUUGGUuaUGCC- -5'
12829 5' -49.3 NC_003387.1 + 6970 0.74 0.621954
Target:  5'- gCCGCCCUcgucGAgGGGACGAcaacuggacCCGGUACGGa -3'
miRNA:   3'- -GGCGGGA----CU-UUCUGCUu--------GGUUAUGCC- -5'
12829 5' -49.3 NC_003387.1 + 8104 0.73 0.722657
Target:  5'- cCCGCCC--GAGGGCGAGCCcagcucGUACGc -3'
miRNA:   3'- -GGCGGGacUUUCUGCUUGGu-----UAUGCc -5'
12829 5' -49.3 NC_003387.1 + 30067 0.72 0.733533
Target:  5'- gCGCCCUGAcggccgccGGGGCGAGCaugCAGUaccucaacgGCGGg -3'
miRNA:   3'- gGCGGGACU--------UUCUGCUUG---GUUA---------UGCC- -5'
12829 5' -49.3 NC_003387.1 + 20369 0.72 0.754951
Target:  5'- cUCGCCUUG-AAGGCGGGCguGgGCGGu -3'
miRNA:   3'- -GGCGGGACuUUCUGCUUGguUaUGCC- -5'
12829 5' -49.3 NC_003387.1 + 30295 0.72 0.754951
Target:  5'- cCCGCgCCUGGGAcGACGcgcauuACCAGggcugGCGGc -3'
miRNA:   3'- -GGCG-GGACUUU-CUGCu-----UGGUUa----UGCC- -5'
12829 5' -49.3 NC_003387.1 + 43070 0.72 0.765469
Target:  5'- aCCGCCCcGAGGGcUGGcacACCAGggugACGGg -3'
miRNA:   3'- -GGCGGGaCUUUCuGCU---UGGUUa---UGCC- -5'
12829 5' -49.3 NC_003387.1 + 35689 0.71 0.786057
Target:  5'- aCGCCCggcGAGGGCGGcaGCCGccGCGGu -3'
miRNA:   3'- gGCGGGac-UUUCUGCU--UGGUuaUGCC- -5'
12829 5' -49.3 NC_003387.1 + 33299 0.71 0.805972
Target:  5'- aCGCCCUGugGGACGGugUAAgugcccGCGa -3'
miRNA:   3'- gGCGGGACuuUCUGCUugGUUa-----UGCc -5'
12829 5' -49.3 NC_003387.1 + 9997 0.71 0.805972
Target:  5'- aCGCCCUGAcgagcAGGuCGGcguuGCCGGUAuCGGu -3'
miRNA:   3'- gGCGGGACU-----UUCuGCU----UGGUUAU-GCC- -5'
12829 5' -49.3 NC_003387.1 + 51311 0.71 0.815647
Target:  5'- aUCGCUCgGGccGACGu-CCGGUGCGGg -3'
miRNA:   3'- -GGCGGGaCUuuCUGCuuGGUUAUGCC- -5'
12829 5' -49.3 NC_003387.1 + 36550 0.7 0.834376
Target:  5'- gCCGCCUauUGGAAGcugGCGAACaugcugGCGGg -3'
miRNA:   3'- -GGCGGG--ACUUUC---UGCUUGguua--UGCC- -5'
12829 5' -49.3 NC_003387.1 + 19876 0.7 0.840724
Target:  5'- gCGCCCUGcAAGACaccgugcugggccuGAGCCAggACGu -3'
miRNA:   3'- gGCGGGACuUUCUG--------------CUUGGUuaUGCc -5'
12829 5' -49.3 NC_003387.1 + 10695 0.7 0.85221
Target:  5'- gCGCCCUGGcgcucGGCGA-CCAucACGGc -3'
miRNA:   3'- gGCGGGACUuu---CUGCUuGGUuaUGCC- -5'
12829 5' -49.3 NC_003387.1 + 32552 0.7 0.85221
Target:  5'- gCCGUCCgGu--GGCGAGCCG--ACGGu -3'
miRNA:   3'- -GGCGGGaCuuuCUGCUUGGUuaUGCC- -5'
12829 5' -49.3 NC_003387.1 + 36068 0.69 0.869071
Target:  5'- gCCGacaCCUGGucGACGuGCaUAAUGCGGu -3'
miRNA:   3'- -GGCg--GGACUuuCUGCuUG-GUUAUGCC- -5'
12829 5' -49.3 NC_003387.1 + 30801 0.69 0.880261
Target:  5'- gCCGCCgaGcaccacaaugucgauGAAG-CGGcACCAGUACGGg -3'
miRNA:   3'- -GGCGGgaC---------------UUUCuGCU-UGGUUAUGCC- -5'
12829 5' -49.3 NC_003387.1 + 4480 0.69 0.884896
Target:  5'- cCCGCCgC-GAAGGcCGAGCCc--GCGGa -3'
miRNA:   3'- -GGCGG-GaCUUUCuGCUUGGuuaUGCC- -5'
12829 5' -49.3 NC_003387.1 + 558 0.69 0.884896
Target:  5'- gCUGCCCUGAcgcGGCGGcuguuggagauuGCCAAcgagauUGCGGc -3'
miRNA:   3'- -GGCGGGACUuu-CUGCU------------UGGUU------AUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.