miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12830 3' -60.6 NC_003387.1 + 18282 0.68 0.323995
Target:  5'- uCGGCAGGCccggCUGCGuuugcugcgcaggaaUGCCgGCGAg -3'
miRNA:   3'- -GCCGUCCGacuaGACGU---------------GCGGgCGCU- -5'
12830 3' -60.6 NC_003387.1 + 15992 0.68 0.320924
Target:  5'- gGGCcgcacuGGCUGGUCcgGUACGgCCGCcGAc -3'
miRNA:   3'- gCCGu-----CCGACUAGa-CGUGCgGGCG-CU- -5'
12830 3' -60.6 NC_003387.1 + 6961 0.68 0.320924
Target:  5'- gGGCAGGCgccaCaGCGCGCCCuCGGc -3'
miRNA:   3'- gCCGUCCGacuaGaCGUGCGGGcGCU- -5'
12830 3' -60.6 NC_003387.1 + 51200 0.68 0.313343
Target:  5'- uCGGCaccgaGGuGCUGAgcCUGCACGUcggCCGCGGc -3'
miRNA:   3'- -GCCG-----UC-CGACUa-GACGUGCG---GGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 33599 0.68 0.305898
Target:  5'- cCGGuCGGGUcgaUGAUCgacUGCGCGCCUcCGAa -3'
miRNA:   3'- -GCC-GUCCG---ACUAG---ACGUGCGGGcGCU- -5'
12830 3' -60.6 NC_003387.1 + 33900 0.68 0.305161
Target:  5'- gCGGCGacccgucGGC-GAUCUGCGCGCaaaCCGCc- -3'
miRNA:   3'- -GCCGU-------CCGaCUAGACGUGCG---GGCGcu -5'
12830 3' -60.6 NC_003387.1 + 18210 0.68 0.29859
Target:  5'- uCGGCGacgcgacgaccGGC-GAcCUGguCGCCCGCGGg -3'
miRNA:   3'- -GCCGU-----------CCGaCUaGACguGCGGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 5020 0.68 0.29859
Target:  5'- aCGGCAGGCUcacGAgg-GCgGCGCUgCGCGAg -3'
miRNA:   3'- -GCCGUCCGA---CUagaCG-UGCGG-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 2297 0.68 0.291417
Target:  5'- uGGCguacgccgAGGCgacGAUCUGC-CGCCCGaCGu -3'
miRNA:   3'- gCCG--------UCCGa--CUAGACGuGCGGGC-GCu -5'
12830 3' -60.6 NC_003387.1 + 4156 0.69 0.28438
Target:  5'- aGGCGGGCgucgaUGCACGCCuggcaCGUGAc -3'
miRNA:   3'- gCCGUCCGacuagACGUGCGG-----GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 47767 0.69 0.277478
Target:  5'- aCGGCcugaccGGCUGGUCUGuCACGUUcgacaacgCGCGAc -3'
miRNA:   3'- -GCCGu-----CCGACUAGAC-GUGCGG--------GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 21954 0.69 0.277478
Target:  5'- gCGGCAGGCgucugcgGcgCUGUucaacuacgguGCGCCCgGUGAu -3'
miRNA:   3'- -GCCGUCCGa------CuaGACG-----------UGCGGG-CGCU- -5'
12830 3' -60.6 NC_003387.1 + 40938 0.69 0.264076
Target:  5'- aCGGCGaGCUGGUCgccaagGUGCGCgaCGCGAu -3'
miRNA:   3'- -GCCGUcCGACUAGa-----CGUGCGg-GCGCU- -5'
12830 3' -60.6 NC_003387.1 + 23980 0.69 0.251204
Target:  5'- gGGC-GGCUGGUUgUGCAcCGCCUGCu- -3'
miRNA:   3'- gCCGuCCGACUAG-ACGU-GCGGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 24578 0.7 0.244965
Target:  5'- uGGcCGGGCUcGAUCgugGgGCGCuuGCGGg -3'
miRNA:   3'- gCC-GUCCGA-CUAGa--CgUGCGggCGCU- -5'
12830 3' -60.6 NC_003387.1 + 38938 0.7 0.227015
Target:  5'- uGGCc-GCUGAUCUGCGgcgacgcgaauUGCCgGCGAg -3'
miRNA:   3'- gCCGucCGACUAGACGU-----------GCGGgCGCU- -5'
12830 3' -60.6 NC_003387.1 + 39001 0.7 0.227015
Target:  5'- uGcGCAGGCUGAUCgcccUGCGcCGCCUGgGc -3'
miRNA:   3'- gC-CGUCCGACUAG----ACGU-GCGGGCgCu -5'
12830 3' -60.6 NC_003387.1 + 6834 0.71 0.210192
Target:  5'- gCGGCAGGUcGAUCgcccGCuCGgCCGCGGc -3'
miRNA:   3'- -GCCGUCCGaCUAGa---CGuGCgGGCGCU- -5'
12830 3' -60.6 NC_003387.1 + 90 0.71 0.196492
Target:  5'- aGGCAGacacauggaccccgaGCUGA--UGCGCGCCCGCc- -3'
miRNA:   3'- gCCGUC---------------CGACUagACGUGCGGGCGcu -5'
12830 3' -60.6 NC_003387.1 + 49591 0.71 0.184544
Target:  5'- cCGGUgaccugagccGGGCUGAUCUGCGCGaccaUCGCc- -3'
miRNA:   3'- -GCCG----------UCCGACUAGACGUGCg---GGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.